PR #2318 post-merge fix: Add missing species to geoschem_config.yml

run/CESM/geoschem_config.yml run/GCClassic/geoschem_config.yml.templates/geoschem_config.yml run/GCHP/geoschem_config.yml.templates/geoschem_config.yml run/GEOS/geoschem_config.yml run/WRF/fullchem/geoschem_config.yml - Add transported species: ALK4N2, AROMCHO, HACTA, TLFUONE. These are listed as transported in species_database.yml and need to be also listed here in geoschem_config.yml. Otherwise this will cause a species mismatch in the budget diagnostics. run/shared/species_database.yml - Fix typo: "<KF2" -> "KF2" Signed-off-by: Bob Yantosca <[email protected]>
geoschem · Aug 19, 2024 · 53f9b2e · 53f9b2e
1 parent dd7ba9a
commit 53f9b2e
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Showing 6 changed files with 21 additions and 1 deletion.
diff --git a/run/CESM/geoschem_config.yml b/run/CESM/geoschem_config.yml
@@ -96,12 +96,14 @@ operations:
       - AERI
       - ALD2
       - ALK4
+      - ALK4N2
       - ALK4P
       - ALK7
       - AONITA
       - APAN
       - APINP
       - APINN
+      - AROMCHO
       - AROMP4
       - AROMP5
       - AROMPN
@@ -186,6 +188,7 @@ operations:
       - FURA
       - GLYC
       - GLYX
+      - HACTA
       - H1211
       - H1301
       - H2402
@@ -353,6 +356,7 @@ operations:
       - SOAGX
       - SOAIE
       - STYR
+      - TLFUONE
       - TMB
       - TOLU
       - TSOA0

diff --git a/run/GCClassic/geoschem_config.yml.templates/geoschem_config.yml.fullchem b/run/GCClassic/geoschem_config.yml.templates/geoschem_config.yml.fullchem
@@ -128,12 +128,14 @@ operations:
       - AERI
       - ALD2
       - ALK4
+      - ALK4N2
       - ALK4P
       - ALK7
       - AONITA
       - APAN
       - APINP
       - APINN
+      - AROMCHO
       - AROMP4
       - AROMP5
       - AROMPN
@@ -211,6 +213,7 @@ operations:
       - FURA
       - GLYC
       - GLYX
+      - HACTA
       - H1211
       - H1301
       - H2402
@@ -380,6 +383,7 @@ operations:
       - SOAP
       - SOAS
       - STYR
+      - TLFUONE
       - TMB
       - TOLU
       - XYLE

diff --git a/run/GCHP/geoschem_config.yml.templates/geoschem_config.yml.fullchem b/run/GCHP/geoschem_config.yml.templates/geoschem_config.yml.fullchem
@@ -109,12 +109,14 @@ operations:
       - AERI
       - ALD2
       - ALK4
+      - ALK4N2
       - ALK4P
       - ALK7
       - AONITA
       - APAN
       - APINP
       - APINN
+      - AROMCHO
       - AROMP4
       - AROMP5
       - AROMPN
@@ -192,6 +194,7 @@ operations:
       - FURA
       - GLYC
       - GLYX
+      - HACTA
       - H1211
       - H1301
       - H2402
@@ -361,6 +364,7 @@ operations:
       - SOAP
       - SOAS
       - STYR
+      - TLFUONE
       - TMB
       - TOLU
       - XYLE

diff --git a/run/GEOS/geoschem_config.yml b/run/GEOS/geoschem_config.yml
@@ -92,12 +92,14 @@ operations:
       - AERI
       - ALD2
       - ALK4
+      - ALK4N2
       - ALK4P
       - ALK7
       - AONITA
       - APAN
       - APINP
       - APINN
+      - AROMCHO
       - AROMP4
       - AROMP5
       - AROMPN
@@ -175,6 +177,7 @@ operations:
       - FURA
       - GLYC
       - GLYX
+      - HACTA
       - H1211
       - H1301
       - H2402
@@ -344,6 +347,7 @@ operations:
       - SOAP
       - SOAS
       - STYR
+      - TLFUONE
       - TMB
       - TOLU
       - XYLE

diff --git a/run/WRF/fullchem/geoschem_config.yml b/run/WRF/fullchem/geoschem_config.yml
@@ -97,12 +97,14 @@ operations:
       - AERI
       - ALD2
       - ALK4
+      - ALK4N2
       - ALK4P
       - ALK7
       - AONITA
       - APAN
       - APINP
       - APINN
+      - AROMCHO
       - AROMP4
       - AROMP5
       - AROMPN
@@ -180,6 +182,7 @@ operations:
       - FURA
       - GLYC
       - GLYX
+      - HACTA
       - H1211
       - H1301
       - H2402
@@ -349,6 +352,7 @@ operations:
       - SOAP
       - SOAS
       - STYR
+      - TLFUONE
       - TMB
       - TOLU
       - XYLE

diff --git a/run/shared/species_database.yml b/run/shared/species_database.yml
@@ -3045,7 +3045,7 @@ KF1:
   Fullname: Potassium on dust. Reff = 0.7 microns
   MW_g: 39.10
   WD_CoarseAer: true
-<KF2:
+KF2:
   << : *DST2properties
   Formula: K
   Fullname: Potassium on dust, Reff = 1.4 microns
-Original file line number
+Diff line change
@@ Expand Up / @@ -96,12 +96,14 @@ operations: @@
           - AERI
           - ALD2
           - ALK4
+          - ALK4N2
           - ALK4P
           - ALK7
           - AONITA
           - APAN
           - APINP
           - APINN
+          - AROMCHO
           - AROMP4
           - AROMP5
           - AROMPN
@@ Expand Down Expand Up / @@ -186,6 +188,7 @@ operations: @@
           - FURA
           - GLYC
           - GLYX
+          - HACTA
           - H1211
           - H1301
           - H2402
@@ Expand Down Expand Up / @@ -353,6 +356,7 @@ operations: @@
           - SOAGX
           - SOAIE
           - STYR
+          - TLFUONE
           - TMB
           - TOLU
           - TSOA0
@@ Expand Down @@