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Add model SANN#103

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martin-carrasco wants to merge 42 commits intomaingeometric-intelligence/TopoBenchmark:mainfrom martin-sanngeometric-intelligence/TopoBenchmark:martin-sannCopy head branch name to clipboard

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Commits on Nov 4, 2024

• ADD: Base setup for SANN

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• ADD: Tutorial for SANN

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• ADD: Precompute embeddings for SANN

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• FIX: SAN cell embeddings to encoder

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• FIX: Remove useless comments and fix indexing mixup

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• FIX: Add complex_dim config support and comment laplacian normalization due to division by 0

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• ADD: Batching support and a not so nice fix

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• FIX: Changes to

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• FIX: Custom dataloader removal

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• REMOVE: Testing file for SANN

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• FIX: Should be elif

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Commits on Nov 6, 2024

• FIX: Naming

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Commits on Nov 8, 2024

• Merge branch 'main' of https://github.com/geometric-intelligence/TopoBenchmark into martin-sann

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• Merge branch 'main' of github.com:geometric-intelligence/TopoBenchmark into martin-sann

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Commits on Nov 9, 2024

• Merge branch 'main' of github.com:geometric-intelligence/TopoBenchmark into martin-sann

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• Enabling model-based default transform

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• Adapting config files

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• Adding tutorial

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• Start model adaptation

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• Fix bug in precompute_khop_features

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• Loading and transform working

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• Merge branch 'martin-sann' of https://github.com/pyt-team/TopoBenchmarkX into martin-sann

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• ADD: Fix for SANN and related tests

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• FIX: Configurations and removing useless eavluation stuff

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• ADD: Two tests for SANN

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Commits on Nov 13, 2024

• SaNN running on PROTEINS

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• Config update

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Commits on Nov 19, 2024

• Merge branch 'martin-sann' of https://github.com/geometric-intelligence/TopoBenchmark into martin-sann

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Commits on Nov 20, 2024

• config_rrsolver

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• infer_in_khop_feature_dim working

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Commits on Nov 21, 2024

• working sann for some graph level datasets

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• issue with mutag dataset

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• Fix bug with preserve_edge_attr

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• Adding new config resolvers' tests

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• Minor

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• Merge branch 'main' into martin-sann

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• Fix ruff

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Commits on Nov 22, 2024

• Merge branch 'main' of github.com:geometric-intelligence/TopoBenchmark into martin-sann

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Commits on Nov 25, 2024

• FIX: automatic t-hop neighbourhood calculation based on config

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• Merge branch 'martin-sann' of https://github.com/pyt-team/TopoBenchmarkX into martin-sann

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Commits on Nov 28, 2024

• FIX: Sann config

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Commits on Nov 29, 2024

• FIX: San configurations

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