Fix sccmec versions file

genomic-medicine-sweden · Jan 29, 2025 · 81eddcb · 81eddcb
1 parent 4c803fa
commit 81eddcb
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/nextflow-modules/modules/sccmec/main.nf b/nextflow-modules/modules/sccmec/main.nf
@@ -20,7 +20,7 @@ process sccmec {
     cat <<-END_VERSIONS > ${sample_id}_${task.process}_versions.yml
     ${task.process}:
      sccmec:
-      version: \$(echo \$(sccmec --version 2>&1) | sed -n 's/.*sccmec_targets, version //p')
+      version: \$(echo \$(sccmec --version 2>&1) | sed -n 's/.*sccmec_targets, version //p' | sed 's/ .*//')
       container: ${task.container}
     END_VERSIONS
     """
@@ -33,7 +33,7 @@ process sccmec {
     cat <<-END_VERSIONS > ${sample_id}_${task.process}_versions.yml
     ${task.process}:
      sccmec:
-      version: \$(echo \$(sccmec --version 2>&1) | sed -n 's/.*sccmec_targets, version //p')
+      version: \$(echo \$(sccmec --version 2>&1) | sed -n 's/.*sccmec_targets, version //p' | sed 's/ .*//')
       container: ${task.container}
     END_VERSIONS
     """