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Master html creation with timestamps #43

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Master html creation with timestamps #43

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ryanjameskennedy
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The following was added:

  • Added a master.html template for jinja py script
  • Added a python script that generates a master html file using jinja
  • Added cmd.config for Lund hospital specifications
  • Added a local module generate_master_html
  • Added params.trace_timestamp to nextflow.config
  • Added changelog_update_reminder GA workflow

ryanjameskennedy and others added 21 commits December 16, 2024 16:55
@ryanjameskennedy
Add py script that generates master html
98895ba
@ryanjameskennedy
Add basic master html template
05cc1ac
@ryanjameskennedy
Add basic master html template
e1b9079
@ryanjameskennedy
Add bootstrap to master html template
4f18949
@ryanjameskennedy
Add cards and seqrun date
a47a664
@ryanjameskennedy
Add generate_master_html module
d6b6f40
@ryanjameskennedy
Add generate_master_html module to gmsemu.nf workflow
25caede
@ryanjameskennedy
Add generate_master_html to configs
11df34f
@ryanjameskennedy
Add cmd.config
b8829d8
@ryanjameskennedy
Add search for date_id
917da0e
@ryanjameskennedy
Add nested header to master.html and remove fastqc
a4bfa1c
@ryanjameskennedy
Merge pull request #2 from SMD-Bioinformatics-Lund/35-generate-master…
eba0557 
…-html

Add py script that generates master html
@ryanjameskennedy
Merge branch 'dev' into main
7ea775e
@ryanjameskennedy
Merge dev branch into main w resolved conflicts
0e37f44
@ryanjameskennedy
Change pipeline execution output filenames
1bca118
@ryanjameskennedy
Update generate_master_html to include timestap as input variable
112465a
@ryanjameskennedy
Rm MERGE_BARCODES publishDir for unnecessary publishing of reads to s…
0dcbacc 
…ave space
@ryanjameskennedy
Add params.trace_timestamp
9722dc0
@ryanjameskennedy
Update CHANGELOG re generate_master_html
6050b9b
@ryanjameskennedy
Add changelog_update_reminder GA workflow
5836b23
@ryanjameskennedy
Fix params.trace_timestamp in GENERATE_MASTER_HTML process
af8db01
@ryanjameskennedy ryanjameskennedy requested a review from a team as a code owner February 4, 2025 13:10
@ryanjameskennedy ryanjameskennedy linked an issue Feb 4, 2025 that may be closed by this pull request
Create a master template that points to all html filepaths #35
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Create a master template that points to all html filepaths
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@ryanjameskennedy