Update HGNC to 202410 for GRCh38 #97
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leexgh
changed the title
inodb
reviewed
Jan 22, 2025
| @@ -54,7 +54,7 @@ def main(gff_file, ensembl_transcript_info): | |||
| rows.append(entry_dict) | |||
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| # By first appending it to a list and only adding it to a DF once, performance is greatly improved | |||
| transcript_info = transcript_info.append(rows, ignore_index=True, sort=False) | |||
| transcript_info = pd.concat([transcript_info, pd.DataFrame(rows)], ignore_index=True, sort=False) | |||
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not entirely sure why this is is necessary, is there a row that is not in the correct shape? Wondering if it's better to fix the shape rather than using append in that case?
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@inodb I didn't check it, DataFrame.append is deprecated so that's why I change to .concat.
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Fix: genome-nexus/genome-nexus#765