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Remove usage of defaults conda channel #1487

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Remove usage of defaults conda channel #1487

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d685956
remove defaults channel
bernt-matthias Jan 17, 2025
462c75c
remove from option's default
bernt-matthias Jan 17, 2025
0f619df
eliminate more traces to miniconda
bernt-matthias Jan 17, 2025
b005ce7
Update planemo/options.py
bernt-matthias Jan 17, 2025
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2 changes: 1 addition & 1 deletion planemo/conda.py
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Original file line number Diff line number Diff line change
Expand Up @@ -40,7 +40,7 @@
if TYPE_CHECKING:
from planemo.cli import PlanemoCliContext

BEST_PRACTICE_CHANNELS = ["conda-forge", "bioconda", "defaults"]
BEST_PRACTICE_CHANNELS = ["conda-forge", "bioconda"]


def build_conda_context(ctx: "PlanemoCliContext", **kwds) -> CondaContext:
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6 changes: 3 additions & 3 deletions planemo/options.py
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Expand Up @@ -617,7 +617,7 @@ def conda_ensure_channels_option():
use_global_config=True,
use_env_var=True,
help=("Ensure conda is configured with specified comma separated " "list of channels."),
default="conda-forge,bioconda,defaults",
default="conda-forge,bioconda",
)


Expand All @@ -637,7 +637,7 @@ def conda_auto_init_option():
default=True,
help=(
"Conda dependency resolution for Galaxy will auto install "
"conda itself using miniconda if not availabe on conda_prefix."
"conda itself using miniforge if not availabe on conda_prefix."
),
)

Expand Down Expand Up @@ -2061,7 +2061,7 @@ def mulled_conda_option():
default=None,
help=(
"Install a specific version of Conda before running the command, by "
"default the version that comes with the continuumio miniconda3 image "
"default the version that comes with the miniforge image "
"will be used under Linux and under Mac OS X Conda will be upgraded to "
"to work around a bug in 4.2."
),
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