feat!: streamline annotator interface + refactor internals #1434
jsstevensonpython-cqa.yml
on: pull_request
lint
32s
Matrix: precommit_hooks
Matrix: test
Annotations
10 errors and 4 warnings
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Ruff (D104):
src/ga4gh/vrs/extras/annotator/__init__.py#L1
src/ga4gh/vrs/extras/annotator/__init__.py:1:1: D104 Missing docstring in public package
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Ruff (F821):
src/ga4gh/vrs/extras/annotator/cli.py#L101
src/ga4gh/vrs/extras/annotator/cli.py:101:13: F821 Undefined name `SeqRepoProxyType`
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Ruff (F821):
src/ga4gh/vrs/extras/annotator/cli.py#L103
src/ga4gh/vrs/extras/annotator/cli.py:103:27: F821 Undefined name `SeqRepoProxyType`
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Ruff (F821):
src/ga4gh/vrs/extras/annotator/cli.py#L156
src/ga4gh/vrs/extras/annotator/cli.py:156:22: F821 Undefined name `SeqRepoProxyType`
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Ruff (F821):
src/ga4gh/vrs/extras/annotator/cli.py#L170
src/ga4gh/vrs/extras/annotator/cli.py:170:17: F821 Undefined name `VCFAnnotator`
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Ruff (F821):
src/ga4gh/vrs/extras/annotator/vcf.py#L148
src/ga4gh/vrs/extras/annotator/vcf.py:148:28: F821 Undefined name `output_vcf`
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Ruff (F821):
src/ga4gh/vrs/extras/annotator/vcf.py#L160
src/ga4gh/vrs/extras/annotator/vcf.py:160:20: F821 Undefined name `output_vcf`
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Ruff (F821):
src/ga4gh/vrs/extras/annotator/vcf.py#L171
src/ga4gh/vrs/extras/annotator/vcf.py:171:32: F821 Undefined name `output_vcf`
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Ruff (F821):
src/ga4gh/vrs/extras/annotator/vcf.py#L242
src/ga4gh/vrs/extras/annotator/vcf.py:242:35: F821 Undefined name `output_pickle`
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Ruff (F821):
src/ga4gh/vrs/extras/annotator/vcf.py#L243
src/ga4gh/vrs/extras/annotator/vcf.py:243:32: F821 Undefined name `output_vcf`
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precommit_hooks (end-of-file-fixer)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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precommit_hooks (trailing-whitespace)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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precommit_hooks (mixed-line-ending)
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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lint
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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