test add an error #1403

	name: Python CQA

	on: [push, pull_request]

	jobs:
	lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: recursive
	- uses: actions/setup-python@v5
	- name: Update pip and setuptools
	run: \|
	python -m pip install --upgrade pip setuptools
	- name: Install dependencies
	run: pip install -e '.[dev]'
	- name: Check style
	run: python3 -m ruff check --output-format=github
	- name: Check formatting
	run: python3 -m ruff format --check

	test:
	runs-on: ubuntu-latest
	needs:
	- lint
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.10", "3.11", "3.12"]
	env:
	SEQREPO_ROOT_DIR: ./tests/data/seqrepo/latest
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: recursive
	- uses: actions/cache@v4
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-test-${{ hashFiles('pyproject.toml') }}
	restore-keys: \|
	${{ runner.os }}-pip-
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Update pip and setuptools
	run: \|
	python -m pip install --upgrade pip setuptools
	- name: Install dependencies
	run: \|
	pip install -e .[dev,extras]
	- name: Test with pytest
	run: \|
	python -m pytest

	precommit_hooks:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	cmd:
	- "end-of-file-fixer"
	- "trailing-whitespace"
	- "mixed-line-ending"
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	- uses: pre-commit/[email protected]
	with:
	extra_args: ${{ matrix.cmd }} --all-files

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