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v0.3.3a

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@fredericlemoine fredericlemoine released this 27 Apr 10:48
· 140 commits to master since this release
fa7e2d3
  • Added support for IUPAC characters for translatecommand
  • Added --ref-seq option to goalign subseqto give coordinate based on a given sequence
  • Added consensuscommand (simple majority consensus)
  • Added goalign stats gaps and goalign stats mutations commands
  • Added option --per-sequences to stats char command
  • Added option --unaligned to sample seqs, sample rarefy and goalign replace commands
  • Added goalign append command to concatenate alignments vertically
  • goalign compute distance takes into account ambigous IUPAC characters for nucleotide distance computation (counting one mutation if characters are incompatibles, such as R and Y for example)