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This repository provides DinoSim, a method that leverages the DINOv2 foundation model for zero-shot object detection and segmentation in bioimage analysis. DinoSim uses pretrained DINOv2 embeddings…
scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
This repository contains the software to run a self-driving, multi-scale microscope and tools to process and analyse the resulting data.
Python3.X wrapper for Photometrics and QImaging PVCAM based cameras
computer vision models for single-cell phenotyping
Visual interpretability of image-based classification models by generative latent space disentanglement
SRDTrans: Spatial redundancy transformer for self-supervised fluorescence image denoising
prototype of napari with fastplolib as the graphics backend
Macros and methods to analyse bacterial bioimages
Python package for deep learning based image to image transformation
Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course
Advanced methods in bioimage analysis
Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
A Collection of Papers and Codes in CVPR2023/2022 about low level vision
Tracking and collecting papers/projects/others related to Segment Anything.
Material for the NEUBIAS Defragmentation Training School 2 day 2 workshop section entitled: Parallelization and heterogeneous computing: from pure CPU to GPU-accelerated image processing.
"Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow-based image analysis and new integrated methods for clo…
iSeeBetter: Spatio-Temporal Video Super Resolution using Recurrent-Generative Back-Projection Networks | Python3 | PyTorch | GANs | CNNs | ResNets | RNNs | Published in Springer Journal of Computat…
Modification of the iSeeBetter DL algorithm to make it compatible with microscopy images
MONAI Model Zoo that hosts models in the MONAI Bundle format.
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
Exercise repository for the "Deep Learning for Microscopy Image Analysis" course at the MBL.
A beautiful, simple, clean, and responsive Jekyll theme for academics