Upgrade gunicorn (and fix CI)

[lvarin]

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Summary by Sourcery

Upgrade the project to use Python 3.12 by updating the Dockerfile, GitHub Actions workflow, and setup.py. Update the foca dependency to version 0.13.0 in requirements.txt.

Build:

• Update the Dockerfile to use a base image with Python 3.12.

CI:

• Update the GitHub Actions workflow to use Python 3.12 for checks.

[sourcery-ai]

Reviewer's Guide by Sourcery

This pull request upgrades the project to use Python 3.12. Key changes include updating the GitHub Actions workflow, Dockerfile, and setup.py to reflect the new Python version, as well as updating package dependencies in requirements.txt to ensure compatibility with Python 3.12.

No diagrams generated as the changes look simple and do not need a visual representation.

File-Level Changes

Change	Details	Files
Updated GitHub Actions workflow to use Python 3.12	Changed Python version from 3.7 to 3.12 in the setup-python action	.github/workflows/checks.yml
Updated Dockerfile to use a base image with Python 3.12	Changed base image from elixircloud/foca:20221110-py3.7 to elixircloud/foca:20240711-py3.12	Dockerfile
Updated Python package dependencies to be compatible with Python 3.12	Updated foca package version from 0.12.0 to 0.13.0	requirements.txt
Updated setup.py to reflect support for Python 3.12	Changed programming language classifier from Python 3.7 to Python 3.12	setup.py

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[sourcery-ai]

Hey @lvarin - I've reviewed your changes - here's some feedback:

Overall Comments:

• Please fill out the PR description with the motivation for this upgrade and any compatibility testing performed. A jump from Python 3.7 to 3.12 is significant and needs proper documentation.
• Have all dependencies been verified to work with Python 3.12? Please provide test results and any compatibility issues found/resolved.

Here's what I looked at during the review

• 🟢 General issues: all looks good
• 🟢 Security: all looks good
• 🟢 Testing: all looks good
• 🟢 Complexity: all looks good
• 🟢 Documentation: all looks good

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[lvarin]

To make CI work, I needed to make a lot of changes. I will rebase commits a bit to tidy it up.