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[8.x](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13 #26398

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[8.x](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13

[8.x](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13 #26398

Run time

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Job Run time
lint (windows)
8m 42s
lint (linux)
8m 25s
lint (darwin)
2m 52s
19m 59s