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[7.17](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13 #26395

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[7.17](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13

[7.17](backport #42183) libbeat/tests/system: bump python libs to fix issues with Python 3.13 #26395

Run time

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Job Run time
lint (windows)
5m 21s
lint (linux)
5m 45s
lint (darwin)
1m 35s
12m 41s