Extract model params from supported models

[egouldo]

• resolve merge conflicts
• Remove extra linespace Use logo.png in README to prevent double logo rendering in pkgdown [skip ci] #28
• Add missing @imports
• Update spacing
• Update renv, update roxygen2
• functionalise manuscript code in SM3 #29 update fit_MA_mv - rm duplicate fn added to fit_metafor_mv on other branch - update roxygen blocks
• Upgrade namespace to latest 7.3.2 roxygen
• Update NAMESPACE
• functionalise manuscript code in SM3 #29 regenerate pkg man
• Increment version number
• ** functionalise manuscript code in SM3 #29 rm duplicate creation of fn fit_MA_mv()**
• rm 'multivariate' from description of fit_MA_mv() - mv refers to the rma.mv function which aso fits models with random-effects / mixed effects models, not just multivariate models (and fit_MA_mv() actually does the former, not the latter).
• Shift bt_multivar_mod and euc_multivar_mod code into targets pipeline #63 add fit_multivar_MA function
• Increment version number to 2.0.0.9002
• functionalise manuscript code in SM3 #29 apply multivar regression with conditional filters within meta_analyse_datasets
• functionalise manuscript code in SM3 #29 extract parameters from multivariate model
• Increment version number to 2.0.0.9003
• functionalise manuscript code in SM3 #29 update targets pipeline after be56e37 - supply filter variables - supply explicit NULL in yi application
• functionalise manuscript code in SM3 #29 provide default NULL argument for filter_vars
• functionalise manuscript code in SM3 #29 comment out unused fn definition
• - functionalise manuscript code in SM3 #29 provide character vector of names to join_by() - functionalise manuscript code in SM3 #29 extract and parse symbols to group_by
• functionalise manuscript code in SM3 #29 bug fixes, add cli output to fit_multivar_MA - add check that expected columns exist in input data - Output current grouping variables
• functionalise manuscript code in SM3 #29 fix incorrect join method (was resulting in tibbles in list-column rather than list-column of models)
• functionalise manuscript code in SM3 #29 replace any NULL vals in list-col with NA - was causing problems for map_if() predicate check expressions in make_viz()
• functionalise manuscript code in SM3 #29 use same approach as fit_multivar_MA to maintain model objects in global env
• ensure inverse weights applied to categorical weighting models #35 continuous rating models should have also had model weights removed
• functionalise manuscript code in SM3 #29 rm whitespace
• functionalise manuscript code in SM3 #29 fix bug where review_data not unnested for yi datasets
• Increment version number to 2.0.0.9004
• Run targets with future:: to speed-up - takes 1 minute to run locally, yippeeee!!!! remember when it used to take 10 mins!!!!
• Shift bt_multivar_mod and euc_multivar_mod code into targets pipeline #63 functionalise manuscript code in SM3 #29 update documenation
• rebuild targets after functionalise manuscript code in SM3 #29 Shift bt_multivar_mod and euc_multivar_mod code into targets pipeline #63 changes
• Increment version number to 2.0.0.9005
• Increment version number to 2.1.0
• Add lme4 to targets functionalise manuscript code in SM3 #29 *ALL* model_params outputs return NA.... #67
• update renv.lock
• Rebuild targets pipeline and package functionalise manuscript code in SM3 #29 Missing variables to be coded in mean/sd parameter lookup table #80
• Increment version number to 2.2.0
• Redescribe function name
• Update fit_MA_mv() - update function argument in arg definition and in function body argument name incorrect in fit_MA_mv #89 - switch object names to reflect arg names
• argument name incorrect in fit_MA_mv #89 rebuild doc
• Increment version number to 2.2.0.9000
• update Z_VZ_preds() - fix typo - fix spacing
• Rbuildignore the _targets/ dir
• Dealing with Large data objects in package #91 Depend on qs (switching qs for faster lazy load of package data) - note may reconsider against loading all data into users memory by lazy-loading
• - Dealing with Large data objects in package #91 targets write objects qith qs, not as rds objects - fix indentation
• Dealing with Large data objects in package #91 do not lazy load data - see Dealing with Large data objects in package #91 (comment)
• Dealing with Large data objects in package #91 switch to using crew:: for distributed execution of tar_make()
• Dealing with Large data objects in package #91 compress output when writing package data
• Dealing with Large data objects in package #91 namespace ManyEcoEvo calls
• rm erroneous namespacing of ManyEcoEvo objects in call to summarise_study
• As per a577273 rm erroneous namespacing of ManyEcoEvo objects that should draw from input arguments not package data
• update lockfile Dealing with Large data objects in package #91 - snapshot after crew::
• Increment version number to 2.2.0.9001
• Rebuild package after updates to Dealing with Large data objects in package #91
• Increment version number to 2.2.0.9002
• Dealing with Large data objects in package #91 mv package qs:: from depends to suggests - only needed for running targets pipeline, hence does not need to be in depends.
• update renv Dealing with Large data objects in package #91
• *ALL* model_params outputs return NA.... #67 update class to trigger model_params to "lme4" MA_mod_mv is class "lme4" and "lmerMod", not "merMod"
• Increment version number to 2.2.0.9003
• *ALL* model_params outputs return NA.... #67 extend model_params extraction to all models where the class is supported by parameters::
• Increment version number to 2.2.0.9004
• Increment version number to 2.2.0.9005
• Fix *ALL* model_params outputs return NA.... #67 model_params - run on any model supported by parameters:: - deals with the problem of the list-col being named for only some rows by wrapping the .p in possibly() (otherwise there's a mismatch in depth)
• Increment version number to 2.2.0.9006
• Dealing with Large data objects in package #91 rm namespacing to ensure dependencies between functions and analysis pipeline retained
• Increment version number to 2.3.0
• *ALL* model_params outputs return NA.... #67 update renv
• *ALL* model_params outputs return NA.... #67 rebuild targets
• Add datalist to package using tools::
• *ALL* model_params outputs return NA.... #67 rebuild package