Roxygen / Pkgdown documentation overhaul

[egouldo]

• My Signed Commit
• My Signed Commit
• roxygen2 documentation for all functions #102 update roxygen examples and doc /document
• Write vignettes #59 add exclusions subsection to vignette /document
• roxygen2 documentation for all functions #102 add examples, seealso and explicit by = argument in left_join() call
• roxygen2 documentation for all functions #102 update function roxygen - rename fn title, - give more detail in @returns, - explain mechanics in @details, - switch to @import instead of @importFrom, - add @family and @seealso tags
• roxygen2 documentation for all functions #102 combine @Rdname and @describeIn approach to merging function documentation for _back() family \document
• Write vignettes #59 describe back-transformation workflow in vignette
• Update vignette - Write vignettes #59 add info about clean_response_transformation()
• increment version to 2.3.0.9001 /document
• roxygen2 documentation for all functions #102 add @import packages to documentation and update descriotion / title
• roxygen2 documentation for all functions #102 add @import calls to function doc
• roxygen2 documentation for all functions #102 add @seealso entry
• Write vignettes #59 add examples and explanation of standardising responses / back-transforming /document
• Increment version number to 2.3.0.9002
• roxygen2 documentation for all functions #102 update namespace
• Typo in cli output
• roxygen2 documentation for all functions #102 Write vignettes #59 include vignette cross-refs for pkgdown AND interactive - https://stackoverflow.com/questions/73911723/how-to-have-pkgdown-use-figure-numbers-and-cross-references-in-vignettes - https://forum.posit.co/t/cross-references-in-r-vignettes/138463/2
• Upkeep for ManyEcoEvo (2024) #97 update README explanation of targets script
• Organise Pkgdown / Roxygen Documentation #65 reorganise reference list
• roxygen2 documentation for all functions #102 update and add @import calls
• roxygen2 documentation for all functions #102 Write vignettes #59 add rmarkdown and bookdown to pkg depends - roxygen2 documentation for all functions #102 rm duplicate tidyselect import - required for 02151e5
• Increment version number to 2.3.0.9003
• Upkeep for ManyEcoEvo (2024) #97 Rbuildignore ignore analyst_data files
• add comment noting bug
• Upkeep for ManyEcoEvo (2024) #97 Write vignettes #59 roxygen2 documentation for all functions #102 add snapshot bookdown to renv

[egouldo]

/document