SDS #719
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| name: SDS | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: main | |
| pull_request: | |
| branches: main | |
| schedule: | |
| - cron: "0 4 * * *" | |
| env: | |
| registry: my_registry_name | |
| DB_HOST: localhost | |
| DB_USERNAME: postgres | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| services: | |
| postgres: | |
| image: postgis/postgis | |
| env: | |
| POSTGRES_HOST_AUTH_METHOD: trust | |
| POSTGRES_DB: postgis | |
| ALLOW_IP_RANGE: '*' | |
| ports: | |
| - 5432:5432 | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: Install R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.4.0' | |
| use-public-rspm: true | |
| - run: /usr/bin/sudo apt install libudunits2-dev libgdal-dev libgeos-dev libproj-dev libglpk-dev libpq-dev | |
| - run: R -q -e 'install.packages(c("dbscan", "downlit", "cubelyr", "gstat", "hglm", "igraph", "lme4", "lmtest", "maps", "mapview", "matrixStats", "mgcv", "R2BayesX", "remotes", "rnaturalearth", "rnaturalearthdata", "RPostgres", "sf", "spatstat", "spatialreg", "spdep", "spData", "stars", "tidyverse", "viridis", "xml2", "BH"))' | |
| - run: wget https://cran.r-project.org/src/contrib/Archive/rgeoda/rgeoda_0.0.10-4.tar.gz | |
| - run: R CMD INSTALL rgeoda*gz | |
| - run: R -q -e 'options(timeout = 600); install.packages("tmap", repos = c("https://r-tmap.r-universe.dev", "https://cloud.r-project.org"))' | |
| - run: R -q -e 'options(timeout = 600); install.packages("spDataLarge", repos = "https://nowosad.github.io/drat/", type = "source")' | |
| - run: R -q -e 'options(timeout = 3600); install.packages("starsdata", repos = "https://cran.uni-muenster.de/pebesma", type = "source")' | |
| - run: R -q -e 'options(timeout = 3600); install.packages("INLA", repos = c(getOption("repos"), INLA = "https://inla.r-inla-download.org/R/stable"))' | |
| - run: wget -q https://uni-muenster.sciebo.de/s/8mEbeHPOX9GdAYn/download -O sds.zip | |
| - run: unzip -q sds.zip | |
| - run: cp -rp sds/aq . | |
| - run: rm -fr sds | |
| - name: Render and Publish | |
| if: github.event_name != 'pull_request' | |
| uses: quarto-dev/quarto-actions/publish@v2 | |
| with: | |
| target: gh-pages | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |