Merge branch 'main' into python #17
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: python | |
| pull_request: | |
| branches: python | |
| # schedule: | |
| # - cron: "0 4 * * *" | |
| name: SDSwRandPython | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: Install R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.3.0' | |
| use-public-rspm: true | |
| - run: /usr/bin/sudo apt install libudunits2-dev libgdal-dev libgeos-dev libproj-dev libglpk-dev | |
| - run: R -q -e 'install.packages(c("dbscan", "cubelyr", "gstat", "hglm", "igraph", "lme4", "lmtest", "maps", "mapview", "matrixStats", "mgcv", "R2BayesX", "reticulate", "rgeoda", "rnaturalearth", "rnaturalearthdata", "sf", "spatstat", "spatialreg", "spdep", "spData", "stars", "tidyverse", "tmap"))' | |
| - run: R -q -e 'options(timeout = 600); install.packages("spDataLarge", repos = "https://nowosad.github.io/drat/", type = "source")' | |
| - run: R -q -e 'options(timeout = 3600); install.packages("starsdata", repos = "http://cran.uni-muenster.de/pebesma", type = "source")' | |
| - run: R -q -e 'options(timeout = 600)' -e 'install.packages("INLA", repos = c(getOption("repos"), INLA="https://inla.r-inla-download.org/R/stable"))' | |
| - run: R -q -e 'install.packages(c("lme4"), type = "source", repos = "https://cran.uni-muenster.de/")' | |
| - run: wget -q https://uni-muenster.sciebo.de/s/8mEbeHPOX9GdAYn/download -O sds.zip | |
| - run: unzip -q sds.zip | |
| - run: cp -rp sds/aq . | |
| - run: rm -fr sds | |
| - run: R -q -e 'install.packages("spatialreg", repos = c("https://r-spatial.r-universe.dev", "https://cloud.r-project.org"))' # to be removed | |
| - name: Install Python and Dependencies | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| cache: 'pip' | |
| - run: pip install -r requirements.txt | |
| - run: mkdir python | |
| - run: cp -r *qmd *yml *bib images data aq python | |
| - name: Render and Publish | |
| uses: quarto-dev/quarto-actions/publish@v2 | |
| with: | |
| target: gh-pages | |
| path: python | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |