Merge pull request #210 from DunklesArchipel/adopt-to-schema #1202
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| name: Build | |
| on: | |
| push: { branches: [ "main" ] } | |
| pull_request: { branches: [ "main" ] } | |
| concurrency: | |
| group: build-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build-manual: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: { submodules: recursive } | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: { miniforge-variant: "Mambaforge" } | |
| - name: install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| mamba env update --quiet -n test -f environment.yml | |
| conda list | |
| - name: digitize | |
| shell: bash -l {0} | |
| run: | | |
| cd data | |
| make | |
| - name: install echemdb-website | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| - name: mkdocs | |
| shell: bash -l {0} | |
| run: | | |
| # Since no browser is installed during this CI run, plotly fails to | |
| # produce HTML output, see https://github.com/plotly/plotly.py/blob/2c2dd6ab2eeff73c782457f33c590c1d09a97625/packages/python/plotly/plotly/io/_renderers.py#L532 | |
| export PLOTLY_RENDERER=browser | |
| mkdocs build --strict | |
| mv data generated/website/ | |
| # Disable further processing by GitHub | |
| touch generated/website/.nojekyll | |
| - name: fix permissions | |
| shell: bash -l {0} | |
| run: | | |
| # Strangely, the linkchecker modules are installed writable and linkchecker then refuses to load them. | |
| chmod -R a-w `python -c "from distutils.sysconfig import get_python_lib; print(get_python_lib())"` | |
| - name: detect broken links | |
| shell: bash -l {0} | |
| run: | | |
| python -m http.server 8880 --directory generated/website & | |
| sleep 1 | |
| # We check for broken links: | |
| # * ignore fonts.gstatic.com which is mentioned by a link preconnect tag that linkchecker does not parse correctly. | |
| # * ignore DOIs since some publishers ban GitHub or bots. | |
| linkchecker --check-extern --no-robots --ignore fonts.gstatic.com --ignore doi.org http://localhost:8880/ --ignore mybinder.org --ignore osti.gov --no-warnings | |
| # We only check links on Linux since we do not want to get flagged because of too many requests by the target websites. | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| - uses: JamesIves/[email protected] | |
| with: | |
| branch: gh-pages | |
| folder: generated/website | |
| target-folder: "" | |
| single-commit: true | |
| if: ${{ github.event_name == 'push' && matrix.os == 'ubuntu-latest' }} | |
| - name: doctest against generated website data | |
| shell: bash -l {0} | |
| run: | | |
| # Create a ZIP archive similar to the one automatically rovided by GitHub. | |
| mkdir website-gh-pages | |
| cp -R generated/website/data website-gh-pages/ | |
| zip -r generated/website/website-gh-pages.zip website-gh-pages | |
| # Run tests against the new ZIP archive. | |
| export ECHEMDB_DATABASE_URL=http://localhost:8880/website/website-gh-pages.zip | |
| pytest -n auto --doctest-plus --remote-data --doctest-modules website | |
| # We only run tests on Linux since we already run tests for all OSes in the test workflow. | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| env: | |
| MAKEFLAGS: -j2 |