Test data for the workflow (#16)

* Adds test-data * Create README.md --------- Co-authored-by: Pedro Madrigal <[email protected]>
ebi-gene-expression-group · Mar 4, 2025 · 56fab2b · 56fab2b
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diff --git a/test-data/README.md b/test-data/README.md
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+## Test datasets for Single-Cell Expression Atlas workflow
+
+The workflow can be executed for two types of scRNA-seq technologies: plate-based and droplet-based.
+
+1. For plate-based data (test-plate). More details on SC Expression Atlas [E-MTAB-9801](https://www.ebi.ac.uk/gxa/sc/experiments/E-MTAB-9801):
+
+```
+nextflow run main.nf \
+--slurm -resume \
+--dir_path test-plate \
+--output_path test-plate-out \
+--celltype_field authors_cell_type_-_ontology_labels
+```
+here, `--technology` is not specified because it set to plate by default.
+
+2. For droplet-based data (test-droplet). More details on SC Expression Atlas [E-GEOD-130148](https://www.ebi.ac.uk/gxa/sc/experiments/E-GEOD-130148):
+
+```
+nextflow run main.nf \
+--slurm -resume \
+--dir_path test-droplet \
+--output_path test-droplet-out \
+--technology droplet \
+--celltype_field authors_cell_type_-_ontology_labels
+```
+
+here, for both the examples `--celltype_field` is optional