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Move to scanpy 1.9.8#133

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pcm32 wants to merge 17 commits intodevelopebi-gene-expression-group/scanpy-scripts:developfrom feature/scanpy_1.9.8ebi-gene-expression-group/scanpy-scripts:feature/scanpy_1.9.8Copy head branch name to clipboard

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Commits on Feb 20, 2024

• Move to scanpy 1.9.8

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Commits on Feb 21, 2024

• Try python 3.10 to 3.12

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• Try python 3.10 only

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• bbknn to 1.6.0 for newer python versions

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• Try not pinning scipy

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• Numpy restrictions for scipy (bknn)

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Commits on Jul 4, 2024

• Avoid pining numpy

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• Unpin bbknn

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• Pin numpy back

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Commits on Jul 5, 2024

• Make sure newer bbknn is used, older one is not detected

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Commits on Dec 3, 2024

• upgrade to 1.10.3

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• update deprecated action

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• set up channels priority

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• pin python to 3.10

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• try python 3.12

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• add scipy

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  4dec78f

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• set version restrictions to numpy

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