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update README.md
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bblodfon committed Jan 31, 2020
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# Examples

Get the list of provided argument options:
Get the list of all **provided user options**:
```shell script
java -cp target/abmlog-1.2.0-jar-with-dependencies.jar eu.druglogics.abmlog.BooleanModelGenerator
```

The below example will generate all the possible boolean models and export them with no calculation of attractors:
The below example will generate all the possible boolean models and export them with **no calculation of attractors**:
```
java -cp target/abmlog-1.2.0-jar-with-dependencies.jar eu.druglogics.abmlog.BooleanModelGenerator --file=test/test.sif
```
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```

All attractors are calculated using the [BioLQM](https://github.com/colomoto/bioLQM) library.
The result models are saved in both **BoolNet** (.bnet) and **Gitsbe** (.gitsbe) formats.
The result models are saved in both **BoolNet** (.bnet) and **Gitsbe** (.gitsbe) formats.

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