adding more logs

.github/workflows/main.yml

@@ -50,11 +50,11 @@ jobs:
     - name: Pip install requests
       if: matrix.os == 'macOS-latest'
       run: |
-        python -m pip install --upgrade pip
-        pip install requests
+        python3 -m pip install --upgrade pip
+        pip3 install requests
     - name: Download PhysiCell
       run: |
-        python ./tests/get_my_physicell.py
+        python3 ./tests/get_my_physicell.py
         unzip -q PhysiCell-my-physicell.zip -d ./tests
         echo "PhysiCell downloaded, unzipped, and moved to ./tests/PhysiCell"
     - name: Set up test project

tests/get_my_physicell.py

@@ -4,9 +4,9 @@
 
 branch = "my-physicell"
 
-response = requests.get(f"https://api.github.com/repos/drbergman/PhysiCell/branches/{branch}")
-print(response)
-release_name_str = response.json()["name"]
+# response = requests.get(f"https://api.github.com/repos/drbergman/PhysiCell/branches/{branch}")
+# print(response)
+# release_name_str = response.json()["name"]
 
 remote_url = f"https://github.com/drbergman/PhysiCell/archive/refs/heads/{branch}.zip"
 print("remote_url=",remote_url)

tests/test-project/VCT/RunSampling.jl

@@ -34,7 +34,28 @@ config_variation_id = config_variation_ids[1]
 rulesets_variation_id = rulesets_variation_ids[1]
 simulation = Simulation(config_folder, rulesets_collection_folder, ic_cell_folder, ic_substrate_folder, ic_ecm_folder, custom_code_folder, config_variation_id, rulesets_variation_id)
 
-runAbstractTrial(simulation)
+n_ran, n_success = runAbstractTrial(simulation)
+if n_success == 0
+    println("Simulation failed...")
+    # print out the compilation error file if exists
+    if isfile("$(data_dir)/inputs/custom_codes/$(custom_code_folder)/output.err")
+        println(read("$(data_dir)/inputs/custom_codes/$(custom_code_folder)/output.err", String))
+    else
+        println("No compilation error file found.")
+    end
+    # print out the output error file if exists
+    if isfile("$(data_dir)/outputs/simulations/$(simulation.id)/output.err")
+        println(read("$(data_dir)/outputs/simulations/$(simulation.id)/output.err", String))
+    else
+        println("No output error file found.")
+    end
+    # print out the output log file if exists
+    if isfile("$(data_dir)/outputs/simulations/$(simulation.id)/output.log")
+        println(read("$(data_dir)/outputs/simulations/$(simulation.id)/output.log", String))
+    else
+        println("No output log file found.")
+    end
+end
 
 println("""
 ############################################