Skip to content

Commit

Permalink
Update documentation
Browse files Browse the repository at this point in the history
  • Loading branch information
Unknown committed Dec 20, 2024
0 parents commit 299ad17
Show file tree
Hide file tree
Showing 281 changed files with 37,145 additions and 0 deletions.
4 changes: 4 additions & 0 deletions .buildinfo
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
# Sphinx build info version 1
# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 7c7f0320fb5af9c9e11dbccb27b2479d
tags: 645f666f9bcd5a90fca523b33c5a78b7
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file added .doctrees/api/tomobar.astra_wrappers.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.cuda_kernels.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.fourier.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.methodsDIR.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.methodsDIR_CuPy.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.methodsIR.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.methodsIR_CuPy.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.regularisers.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.regularisersCuPy.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.supp.dicts.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.supp.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.supp.funcs.doctree
Binary file not shown.
Binary file added .doctrees/api/tomobar.supp.suppTools.doctree
Binary file not shown.
Binary file added .doctrees/environment.pickle
Binary file not shown.
Binary file added .doctrees/howto/installation.doctree
Binary file not shown.
Binary file added .doctrees/howto/use.doctree
Binary file not shown.
Binary file added .doctrees/index.doctree
Binary file not shown.
Binary file added .doctrees/introduction/about.doctree
Binary file not shown.
Binary file added .doctrees/introduction/dependencies.doctree
Binary file not shown.
Binary file added .doctrees/introduction/references.doctree
Binary file not shown.
Binary file added .doctrees/reference/api.doctree
Binary file not shown.
Binary file added .doctrees/tutorials/basic_iter_recon.doctree
Binary file not shown.
Binary file added .doctrees/tutorials/direct_recon.doctree
Binary file not shown.
Binary file added .doctrees/tutorials/real_data_recon.doctree
Binary file not shown.
Binary file added .doctrees/tutorials/regul_iter_recon.doctree
Binary file not shown.
Binary file added .doctrees/tutorials/synthetic_recon.doctree
Binary file not shown.
Empty file added .nojekyll
Empty file.
Binary file added _images/FBP_dendr.jpg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/FBP_recon.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/FISTA_GH_TV_dendr.jpg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/FISTA_SWLS_TV_dendr.jpg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/FISTA_TV_dendr.jpg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/PWLS_TV_WV_recon.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/PWLS_TV_recon.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/SWLS_TV_WV_recon.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/TomoRec_surf2.jpg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/phantom3d.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/projdata_backgr.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/projdata_norm.jpg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/recsFISTA_stud.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added _images/sinogram3d.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
367 changes: 367 additions & 0 deletions _modules/index.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,367 @@

<!DOCTYPE html>


<html lang="en" data-content_root="../" >

<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &#8212; Tomobar Documentation page</title>



<script data-cfasync="false">
document.documentElement.dataset.mode = localStorage.getItem("mode") || "";
document.documentElement.dataset.theme = localStorage.getItem("theme") || "";
</script>
<!--
this give us a css class that will be invisible only if js is disabled
-->
<noscript>
<style>
.pst-js-only { display: none !important; }

</style>
</noscript>

<!-- Loaded before other Sphinx assets -->
<link href="../_static/styles/theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
<link href="../_static/styles/pydata-sphinx-theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />

<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../_static/styles/sphinx-book-theme.css?v=a3416100" />
<link rel="stylesheet" type="text/css" href="../_static/copybutton.css?v=76b2166b" />
<link rel="stylesheet" type="text/css" href="../_static/css/general.css" />
<link rel="stylesheet" type="text/css" href="../_static/sphinx-design.min.css?v=95c83b7e" />

<!-- So that users can add custom icons -->
<script src="../_static/scripts/fontawesome.js?digest=8878045cc6db502f8baf"></script>
<!-- Pre-loaded scripts that we'll load fully later -->
<link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />

<script src="../_static/documentation_options.js?v=58f36ac1"></script>
<script src="../_static/doctools.js?v=9bcbadda"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/clipboard.min.js?v=a7894cd8"></script>
<script src="../_static/copybutton.js?v=f281be69"></script>
<script src="../_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
<script src="../_static/design-tabs.js?v=f930bc37"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
<script>DOCUMENTATION_OPTIONS.pagename = '_modules/index';</script>
<link rel="icon" href="../_static/tomobar_logo_light.png"/>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
<meta name="docsearch:version" content="" />
<meta name="docbuild:last-update" content="Dec 20, 2024"/>
</head>


<body data-bs-spy="scroll" data-bs-target=".bd-toc-nav" data-offset="180" data-bs-root-margin="0px 0px -60%" data-default-mode="">



<div id="pst-skip-link" class="skip-link d-print-none"><a href="#main-content">Skip to main content</a></div>

<div id="pst-scroll-pixel-helper"></div>

<button type="button" class="btn rounded-pill" id="pst-back-to-top">
<i class="fa-solid fa-arrow-up"></i>Back to top</button>


<dialog id="pst-search-dialog">

<form class="bd-search d-flex align-items-center"
action="../search.html"
method="get">
<i class="fa-solid fa-magnifying-glass"></i>
<input type="search"
class="form-control"
name="q"
placeholder="Search..."
aria-label="Search..."
autocomplete="off"
autocorrect="off"
autocapitalize="off"
spellcheck="false"/>
<span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd>K</kbd></span>
</form>
</dialog>

<div class="pst-async-banner-revealer d-none">
<aside id="bd-header-version-warning" class="d-none d-print-none" aria-label="Version warning"></aside>
</div>


<header class="bd-header navbar navbar-expand-lg bd-navbar d-print-none">
</header>


<div class="bd-container">
<div class="bd-container__inner bd-page-width">





<dialog id="pst-primary-sidebar-modal"></dialog>
<div id="pst-primary-sidebar" class="bd-sidebar-primary bd-sidebar">



<div class="sidebar-header-items sidebar-primary__section">




</div>

<div class="sidebar-primary-items__start sidebar-primary__section">
<div class="sidebar-primary-item">





<a class="navbar-brand logo" href="../index.html">










<img src="../_static/tomobar_logo_light.png" class="logo__image only-light" alt="Tomobar Documentation page - Home"/>
<img src="../_static/tomobar_logo_dark.png" class="logo__image only-dark pst-js-only" alt="Tomobar Documentation page - Home"/>


</a></div>
<div class="sidebar-primary-item">

<button class="btn search-button-field search-button__button pst-js-only" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
<i class="fa-solid fa-magnifying-glass"></i>
<span class="search-button__default-text">Search</span>
<span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd class="kbd-shortcut__modifier">K</kbd></span>
</button></div>
<div class="sidebar-primary-item"><nav class="bd-links bd-docs-nav" aria-label="Main">
<div class="bd-toc-item navbar-nav active">
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Introduction</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../introduction/about.html">About ToMoBAR</a></li>
<li class="toctree-l1"><a class="reference internal" href="../introduction/dependencies.html">Dependencies</a></li>
<li class="toctree-l1"><a class="reference internal" href="../introduction/references.html">References</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">How To's</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../howto/installation.html">Installation Guide</a></li>
<li class="toctree-l1"><a class="reference internal" href="../howto/use.html">Using ToMoBAR</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Tutorials</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../tutorials/direct_recon.html">Direct reconstruction</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tutorials/basic_iter_recon.html">Basic iterative reconstruction</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tutorials/regul_iter_recon.html">Regularised iterative reconstruction</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tutorials/synthetic_recon.html">Synthethic data reconstruction</a></li>
<li class="toctree-l1"><a class="reference internal" href="../tutorials/real_data_recon.html">Real data reconstruction</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Reference guides</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1 has-children"><a class="reference internal" href="../reference/api.html">API reference</a><details><summary><span class="toctree-toggle" role="presentation"><i class="fa-solid fa-chevron-down"></i></span></summary><ul>
<li class="toctree-l2"><a class="reference internal" href="../api/tomobar.methodsDIR.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">tomobar.methodsDIR</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="../api/tomobar.methodsDIR_CuPy.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">tomobar.methodsDIR_CuPy</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="../api/tomobar.methodsIR.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">tomobar.methodsIR</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="../api/tomobar.methodsIR_CuPy.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">tomobar.methodsIR_CuPy</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="../api/tomobar.regularisers.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">tomobar.regularisers</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="../api/tomobar.regularisersCuPy.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">tomobar.regularisersCuPy</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="../api/tomobar.supp.dicts.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">tomobar.supp.dicts</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="../api/tomobar.supp.suppTools.html"><code class="xref py py-mod docutils literal notranslate"><span class="pre">tomobar.supp.suppTools</span></code></a></li>
</ul>
</details></li>
</ul>

</div>
</nav></div>
</div>


<div class="sidebar-primary-items__end sidebar-primary__section">
<div class="sidebar-primary-item">
<div id="ethical-ad-placement"
class="flat"
data-ea-publisher="readthedocs"
data-ea-type="readthedocs-sidebar"
data-ea-manual="true">
</div></div>
</div>


</div>

<main id="main-content" class="bd-main" role="main">



<div class="sbt-scroll-pixel-helper"></div>

<div class="bd-content">
<div class="bd-article-container">

<div class="bd-header-article d-print-none">
<div class="header-article-items header-article__inner">

<div class="header-article-items__start">

<div class="header-article-item"><button class="sidebar-toggle primary-toggle btn btn-sm" title="Toggle primary sidebar" data-bs-placement="bottom" data-bs-toggle="tooltip">
<span class="fa-solid fa-bars"></span>
</button></div>

</div>


<div class="header-article-items__end">

<div class="header-article-item">

<div class="article-header-buttons">



<button onclick="toggleFullScreen()"
class="btn btn-sm btn-fullscreen-button"
title="Fullscreen mode"
data-bs-placement="bottom" data-bs-toggle="tooltip"
>


<span class="btn__icon-container">
<i class="fas fa-expand"></i>
</span>

</button>



<button class="btn btn-sm nav-link pst-navbar-icon theme-switch-button pst-js-only" aria-label="Color mode" data-bs-title="Color mode" data-bs-placement="bottom" data-bs-toggle="tooltip">
<i class="theme-switch fa-solid fa-sun fa-lg" data-mode="light" title="Light"></i>
<i class="theme-switch fa-solid fa-moon fa-lg" data-mode="dark" title="Dark"></i>
<i class="theme-switch fa-solid fa-circle-half-stroke fa-lg" data-mode="auto" title="System Settings"></i>
</button>


<button class="btn btn-sm pst-navbar-icon search-button search-button__button pst-js-only" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
<i class="fa-solid fa-magnifying-glass fa-lg"></i>
</button>

</div></div>

</div>

</div>
</div>



<div id="jb-print-docs-body" class="onlyprint">
<h1></h1>
<!-- Table of contents -->
<div id="print-main-content">
<div id="jb-print-toc">

</div>
</div>
</div>



<div id="searchbox"></div>
<article class="bd-article">

<h1>All modules for which code is available</h1>
<ul><li><a href="tomobar/cuda_kernels.html">tomobar.cuda_kernels</a></li>
<li><a href="tomobar/fourier.html">tomobar.fourier</a></li>
<li><a href="tomobar/methodsDIR.html">tomobar.methodsDIR</a></li>
<li><a href="tomobar/methodsDIR_CuPy.html">tomobar.methodsDIR_CuPy</a></li>
<li><a href="tomobar/methodsIR.html">tomobar.methodsIR</a></li>
<li><a href="tomobar/methodsIR_CuPy.html">tomobar.methodsIR_CuPy</a></li>
<li><a href="tomobar/regularisers.html">tomobar.regularisers</a></li>
<li><a href="tomobar/regularisersCuPy.html">tomobar.regularisersCuPy</a></li>
<li><a href="tomobar/supp/dicts.html">tomobar.supp.dicts</a></li>
<li><a href="tomobar/supp/suppTools.html">tomobar.supp.suppTools</a></li>
</ul>

</article>






<footer class="prev-next-footer d-print-none">

<div class="prev-next-area">
</div>
</footer>

</div>




</div>
<footer class="bd-footer-content">

<div class="bd-footer-content__inner container">

<div class="footer-item">

<p class="component-author">
By Daniil Kazantsev
</p>

</div>

<div class="footer-item">


<p class="copyright">

© Copyright 2024, Diamond Light Source and Manchester University, UK.
<br/>

</p>

</div>

<div class="footer-item">
<p class="last-updated">
Last updated on Dec 20, 2024.
<br/>
</p>
</div>

<div class="footer-item">

</div>

</div>
</footer>


</main>
</div>
</div>

<!-- Scripts loaded after <body> so the DOM is not blocked -->
<script defer src="../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf"></script>
<script defer src="../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf"></script>

<footer class="bd-footer">
</footer>
</body>
</html>
Loading

0 comments on commit 299ad17

Please sign in to comment.