Speedups to segmentation #47
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Conflicts: environment.yml
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I have addressed the issues that were causing tests to fail and moved the setup config to a pyproject.toml file. Merging changes now. |
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I have updated Hysteresis to use numba for its inner loop, which greatly speeds up object segmentation, especially for large domains. I also made the cross-correlation motion estimation optional, which was another source of slowdowns, especially if you weren't using the motion estimation for tracking purposes. There was a bug in ZarrGrid related to the timedelta calculation that I fixed to be compatible with pandas v2. I also made some updates to the environment and versioning.