Merge remote-tracking branch 'origin/pre-commit-ci-update-config' int… #73
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - dev | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| concurrency: | |
| group: ci-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| pip: | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: ["3.7", "3.8", "3.9", "3.10"] | |
| exclude: # Python v3.7 does not support Apple Silicon ARM64 | |
| - python-version: "3.7" | |
| os: macos-latest | |
| include: # run legacy versions on Intel CPUs | |
| - python-version: "3.7" | |
| os: macos-13 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install pbiotools including test dependencies | |
| run: pip install .[test] --verbose | |
| - name: Run tests | |
| run: python -m pytest . -v | |
| conda: | |
| runs-on: ${{matrix.os}} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: ["3.7", "3.8", "3.9", "3.10"] | |
| exclude: # Python v3.7 does not support Apple Silicon ARM64 | |
| - python-version: "3.7" | |
| os: macos-latest | |
| include: # run legacy versions on Intel CPUs | |
| - python-version: "3.7" | |
| os: macos-13 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Create pbiotools conda environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: pbiotools | |
| environment-file: environment.yml | |
| - name: Display conda env info | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Install pbiotools | |
| #run: pip install . --no-deps --ignore-installed -vvv | |
| run: pip install . -vvv | |
| - name: Run tests | |
| run: python -m pytest . -v |