bioflow

A collection of Makefiles for running common tasks for bioinformatics analysis.

Modules

Module	Functionality
alignment	pairwise alignment, multiple sequence alignment
annotation	gene prediction, assembly annotation
assembly	sequence assembly, assembly evaluation
fetch	download biological data
mapping	read mapping, mapping assessment
phylo	maximum likelihood inference, bootstrapping phylogenies
qc	produce FASTQ summary reports, adapter trimming, quality filtering
variant_calling	detecting and filtering variants

Documentation

Full documentation is found in the official bioflow website.

Installation and setup instructions can be found here.