new content from pmc

figures/PMC11234104__gr4.yml

@@ -0,0 +1,29 @@
+---
+pmcid: PMC11234104
+image_filename: gr4.jpg
+figure_link: /pmc/articles/PMC11234104/figure/fig4/
+number: Fig. 4
+figure_title: ''
+caption: Gene biological functions and interactions of CDCA genes in patients with
+  KIRP. (A) PPI network based on the eight CDCA proteins. (B) PPI network for CDCA
+  proteins and the 80 most frequently neighboring proteins. (C) The hub genes identified
+  with Cytoscape for CDCA genes and the 80 most frequently neighboring genes. (D)
+  Three most significant MCODE components form PPI network and function enrichment
+  analysis of three MCODE components independently among CDCA genes and the 80 most
+  frequently neighboring genes. (E, F) GO and KEGG functional enrichment analyses
+  of CDCAs.
+article_title: Comprehensive molecular analyses and experimental validation of CDCAs
+  with potential implications in kidney renal papillary cell carcinoma prognosis.
+citation: Fuping Li, et al. Heliyon. 2024 Jun 30;10(12):e33045.
+
+doi: 10.1016/j.heliyon.2024.e33045
+journal_title: Heliyon
+journal_nlm_ta: Heliyon
+publisher_name: Elsevier
+
+keywords:
+- CDCA gene family
+- Prognostic biomarkers
+- Kidney renal papillary cell carcinoma
+
+---

figures/PMC11275979__nihpp-rs4469045v1-f0005.yml

@@ -0,0 +1,36 @@
+---
+pmcid: PMC11275979
+image_filename: nihpp-rs4469045v1-f0005.jpg
+figure_link: /pmc/articles/PMC11275979/figure/F5/
+number: Figure 5
+figure_title: ''
+caption: 'Gene ontology annotation and protein-protein interaction networks of significantly
+  abundant proteins in Aβ plaques. A. GO terms heatmap depicts top 10 enriched BP
+  and CC GO terms for significantly abundant Aβ plaque proteins in DS, EOAD and LOAD.
+  Color indicates the adjusted p-value <0.05 (−Log10 [adj. p-value]). (B-D) Protein
+  networks (PPI Enrichment p=1 × 10−16) show functional and physical amyloid plaques
+  protein associations in DS (B), EOAD (C) and LOAD (D). Node color indicates fold-change
+  (log2 [FC]) and node size depicts adjusted p-value (−log10 [p-value]) from the student’s
+  two-tailed t test. Disconnected nodes are not shown in the network. Colored dotted
+  lines highlight groups of proteins based on functions/pathways observed in the GO
+  terms; Blue: APP protein metabolic process, Red: immune response and inflammation,
+  Green: lysosomal-related functions, Purple: intermediate filament proteins, glial
+  cells. GO terms annotation was performed using R package clusterProfiler v 4.8.2.
+  PPI networks were created in Cytoscape v 3.10.0 using STRING database v 11.5.'
+article_title: Comparison of the Amyloid Plaque Proteome in Down Syndrome, Early-Onset
+  Alzheimer’s Disease and Late-Onset Alzheimer’s Disease.
+citation: Mitchell Martá-Ariza, et al. Res Sq. 2024 Jul 15:rs.3.rs-4469045.
+
+doi: 10.21203/rs.3.rs-4469045/v1
+journal_title: Research Square
+journal_nlm_ta: Res Sq
+publisher_name: American Journal Experts
+
+keywords:
+- Down syndrome
+- Alzheimer’s disease
+- Proteomics
+- Amyloid-β
+- Neuropathology
+
+---

figures/PMC11361848__ijsc-17-3-298-f5.yml

@@ -0,0 +1,27 @@
+---
+pmcid: PMC11361848
+image_filename: ijsc-17-3-298-f5.jpg
+figure_link: /pmc/articles/PMC11361848/figure/F5/
+number: Fig. 5
+figure_title: ''
+caption: Protein-protein interaction (PPI) examination of potential proteins that
+  may interact with Six1. (A) Human SIX1 PPI network was analyzed and visualized by
+  STRING and Cytoscape. (B) Mouse Six1 PPI network was analyzed and visualized by
+  STRING and Cytoscape. (C) Gene ontology (GO) cell component term analysis of human
+  SIX1 interacted proteins based on PPI analysis. (D) GO cell component term analysis
+  of mouse Six1 interacted proteins based on PPI analysis. (E) Kyoto Encyclopedia
+  of Genes and Genomes (KEGG) analysis of human Six1 interacted proteins based on
+  PPI analysis. (F) KEGG analysis of mouse Six1 interacted proteins based on PPI analysis.
+  Asterisk (*) indicates significant difference with p<0.01, and the blue-colored
+  part indicates p<0.05.
+article_title: Cytoplasmatic Localization of Six1 in Male Testis and Spermatogonial
+  Stem Cells.
+citation: Mingming Qin, et al. Int J Stem Cells. 2024;17(3):298-308.
+
+doi: ''
+journal_title: ''
+journal_nlm_ta: ''
+publisher_name: ''
+
+keywords:
+---

figures/fetch.log

@@ -1,2 +1,2 @@
-https://www.ncbi.nlm.nih.gov/pmc/?term=(network-OR-PPI+cytoscape)+AND+(2024/07/01[PUBDATE]+%3A+3000/01/01[PUBDATE])&report=imagesdocsum&dispmax=100
- 4 results
+https://www.ncbi.nlm.nih.gov/pmc/?term=(network-OR-PPI+cytoscape)+AND+(2024/08/01[PUBDATE]+%3A+3000/01/01[PUBDATE])&report=imagesdocsum&dispmax=100
+ 3 results

query_config.yml

@@ -1,5 +1,5 @@
 terms:
 - network OR PPI
 - cytoscape
-last_run: 2024/08/01
+last_run: 2024/09/01
 date_range: ~