update with pre-commit hooks

notebooks/tool_implementation/tuto_SPE.ipynb

@@ -10,11 +10,16 @@
     "import os\n",
     "import pathlib\n",
     "\n",
-    "logging.basicConfig(format=\"%(asctime)s %(name)s %(levelname)s %(message)s\",level=logging.INFO)\n",
+    "logging.basicConfig(\n",
+    "    format=\"%(asctime)s %(name)s %(levelname)s %(message)s\", level=logging.INFO\n",
+    ")\n",
     "log = logging.getLogger(__name__)\n",
     "log.handlers = logging.getLogger(\"__main__\").handlers\n",
     "\n",
-    "from nectarchain.makers.calibration import FlatFieldSPEHHVStdNectarCAMCalibrationTool,FlatFieldSPENominalStdNectarCAMCalibrationTool"
+    "from nectarchain.makers.calibration import (\n",
+    "    FlatFieldSPEHHVStdNectarCAMCalibrationTool,\n",
+    "    FlatFieldSPENominalStdNectarCAMCalibrationTool,\n",
+    ")"
    ]
   },
   {
@@ -23,7 +28,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "run_number = 3936\n"
+    "run_number = 3936"
    ]
   },
   {
@@ -224,22 +229,22 @@
     }
    ],
    "source": [
-    "\n",
     "tool = FlatFieldSPENominalStdNectarCAMCalibrationTool(\n",
-    "                                        progress_bar = True,\n",
-    "                                        method = 'LocalPeakWindowSum',\n",
-    "                                        extractor_kwargs = {\"window_width\": 12, \"window_shift\": 4},\n",
-    "                                        multiproc = True,\n",
-    "                                        nproc = 10,\n",
-    "                                        run_number = run_number,\n",
-    "                                        max_events = 10000,\n",
-    "                                        log_level = 20,\n",
-    "                                        reload_events = True,\n",
-    "                                        #events_per_slice = 200,\n",
-    "                                        asked_pixels_id = [52,48],\n",
-    "                                        output_path = pathlib.Path(os.environ.get(\"NECTARCAMDATA\",\"/tmp\")) / \"tutorials/\" / f\"SPEfit_{run_number}.h5\"\n",
-    "                                        )\n",
-    "\n"
+    "    progress_bar=True,\n",
+    "    method=\"LocalPeakWindowSum\",\n",
+    "    extractor_kwargs={\"window_width\": 12, \"window_shift\": 4},\n",
+    "    multiproc=True,\n",
+    "    nproc=10,\n",
+    "    run_number=run_number,\n",
+    "    max_events=10000,\n",
+    "    log_level=20,\n",
+    "    reload_events=True,\n",
+    "    # events_per_slice = 200,\n",
+    "    asked_pixels_id=[52, 48],\n",
+    "    output_path=pathlib.Path(os.environ.get(\"NECTARCAMDATA\", \"/tmp\"))\n",
+    "    / \"tutorials/\"\n",
+    "    / f\"SPEfit_{run_number}.h5\",\n",
+    ")"
    ]
   },
   {
@@ -550,7 +555,7 @@
     }
    ],
    "source": [
-    "output = tool.finish(return_output_component = True, display=True,figpath = os.getcwd())\n",
+    "output = tool.finish(return_output_component=True, display=True, figpath=os.getcwd())\n",
     "output"
    ]
   },

notebooks/tool_implementation/tuto_SPE.py

@@ -0,0 +1,75 @@
+# ---
+# jupyter:
+#   jupytext:
+#     text_representation:
+#       extension: .py
+#       format_name: percent
+#       format_version: '1.3'
+#       jupytext_version: 1.14.6
+#   kernelspec:
+#     display_name: nectarchain
+#     language: python
+#     name: python3
+# ---
+
+# %%
+import logging
+import os
+import pathlib
+
+logging.basicConfig(
+    format="%(asctime)s %(name)s %(levelname)s %(message)s", level=logging.INFO
+)
+log = logging.getLogger(__name__)
+log.handlers = logging.getLogger("__main__").handlers
+
+from nectarchain.makers.calibration import (
+    FlatFieldSPEHHVStdNectarCAMCalibrationTool,
+    FlatFieldSPENominalStdNectarCAMCalibrationTool,
+)
+
+# %%
+run_number = 3936
+
+# %%
+
+# !ls -lh $NECTARCAMDATA/runs/*
+
+# %%
+tool = FlatFieldSPENominalStdNectarCAMCalibrationTool(
+    progress_bar=True,
+    method="LocalPeakWindowSum",
+    extractor_kwargs={"window_width": 12, "window_shift": 4},
+    multiproc=True,
+    nproc=10,
+    run_number=run_number,
+    max_events=10000,
+    log_level=20,
+    reload_events=True,
+    # events_per_slice = 200,
+    asked_pixels_id=[52, 48],
+    output_path=pathlib.Path(os.environ.get("NECTARCAMDATA", "/tmp"))
+    / "tutorials/"
+    / f"SPEfit_{run_number}.h5",
+)
+
+# %%
+tool
+
+# %%
+tool.initialize()
+
+# %%
+tool.setup()
+
+# %%
+tool.start()
+
+# %%
+output = tool.finish(return_output_component=True, display=True, figpath=os.getcwd())
+output
+
+# %%
+output[0].resolution
+
+# %%