Code

Fasta2speclib refactoring#193

Code

Merged

RalfG merged 15 commits intoreleasescompomics/ms2pip:releasesfrom fasta2speclib-refactoringcompomics/ms2pip:fasta2speclib-refactoringCopy head branch name to clipboardFeb 27, 2023

+931-599

Commits

Commits on Feb 15, 2023

• - Specify lineterminators in DataFrame.to_csv

  Show description for 3e4935d
  RalfG

  committed
  3e4935d

  Copy full SHA for 3e4935d

Commits on Feb 21, 2023

• Completely refactor fasta2speclib; implement new features:

  Show description for 7630502
  RalfG

  committed
  7630502

  Copy full SHA for 7630502

Commits on Feb 24, 2023

• Fix type hints

  RalfG

  committed
  3830204

  Copy full SHA for 3830204

• Use semi-colon for spectronaut CSV output

  RalfG

  committed
  7623bb5

  Copy full SHA for 7623bb5

• Remove unsupported argument for mzml.read; Add modstring info to exception raise

  RalfG

  committed
  4f2883a

  Copy full SHA for 4f2883a

• Restructure as class to allow control over individual workflow steps

  RalfG

  committed
  e05d6b3

  Copy full SHA for e05d6b3

Commits on Feb 26, 2023

• add protein list to peprec

  ArthurDeclercq

  committed
  9777b20

  Copy full SHA for 9777b20

• Make count_fasta_entries global function

  RalfG

  committed
  de273d9

  Copy full SHA for de273d9

• Merge branch 'fasta2speclib-refactoring' of https://github.com/compomics/ms2pip_c into fasta2speclib-refactoring

  RalfG

  committed
  9f2d354

  Copy full SHA for 9f2d354

• Fix protein entries in peprec

  RalfG

  committed
  b2d9d35

  Copy full SHA for b2d9d35

• Add black configuration

  RalfG

  committed
  819c250

  Copy full SHA for 819c250

• Merge branch 'releases' of https://github.com/compomics/ms2pip_c into fasta2speclib-refactoring

  RalfG

  committed
  def1d42

  Copy full SHA for def1d42

Commits on Feb 27, 2023

• Relax Pandas requirement for Python 3.7 support

  RalfG

  committed
  60d7729

  Copy full SHA for 60d7729

• Fix support for old Pandas < 1.5 (required for Python 3.7)

  RalfG

  committed
  de9fc8a

  Copy full SHA for de9fc8a

• Merge branch 'releases' into fasta2speclib-refactoring

  RalfG

  authored
  804852d

  Copy full SHA for 804852d