2022.06

What's Changed

• simplify companydetail page by @Kicksta in #1660
• Remove invalid related field archive by @miriam-groeneveld in #1665
• Disable sorting on leaderboard extra fields by @jmsmkn in #1667
• Adds basic OpenSeaDragon view by @jmsmkn in #1669
• change ordering, include distributions in search, include totalcount by @Kicksta in #1661
• Use algorithm image from filesystem if it exists for init_gc_demo by @HarmvZ in #1670
• Fix downloading of image files in development by @jmsmkn in #1677
• Update development documentation by @amickan in #1678
• fixed indentation error in development documentation by @amickan in #1679
• Update OpenSeadragon settings by @jmsmkn in #1680
• Unify backend-code for counters in list views by @chrisvanrun in #1681
• Add image answer type by @MikeOverkamp-diag in #1657
• Use ComponentInterfaces to define output of algorithm jobs and evaluations by @miriam-groeneveld in #1664
• Use common user group management forms, views and templates by @jmsmkn in #1684
• Use PaginatedTableListView for Images List in a reader study by @jmsmkn in #1686
• Adds watchdog in development for inotify support in werkzeug by @jmsmkn in #1687
• Improve the user search and selection form by @amickan in #1691
• add meta property by @Kicksta in #1690
• Moves verification domain out of title by @jmsmkn in #1694
• Add social media image by @amickan in #1696
• Add multiple polygon mask answers by @jmsmkn in #1699
• Add Multiple polygons (saved as mask) to annotationtypes by @miriam-groeneveld in #1702
• Reduce load-time of the reader-study detail page by @chrisvanrun in #1703
• Clean code of reader-study detail and readers progress pages by @chrisvanrun in #1704
• Add cases nav item back to reader study page by @MikeOverkamp-diag in #1706
• Catch celery soft time limit for image imports by @amickan in #1707
• change url, add type, adapt image width by @Kicksta in #1705
• Add codeowners by @jmsmkn in #1708
• 1693 algorithm output as file by @miriam-groeneveld in #1698
• Add remove button for questions in reader studies by @amickan in #1710
• Disable the profile list views by @jmsmkn in #1711
• Add RGB support for dicom importer by @MikeOverkamp-diag in #1712
• Replace Userena and Social Auth with Django All Auth by @jmsmkn in #1713
• Remove django-social-app and django-userena by @jmsmkn in #1714
• Add custom signup and signin forms by @jmsmkn in #1715
• 7z submissions to evaluations now get marked as failed by @amickan in #1717
• Show all users reader study progress by @jmsmkn in #1716
• Add csv export for reader studies by @jmsmkn in #1718
• Add pre-commit linting of template files by @jmsmkn in #1719
• Update dependencies by @jmsmkn in #1722
• Fix uvicorn by @jmsmkn in #1724
• Replace result_dict with results by @jmsmkn in #1723
• Fix CSV export of annotations by @jmsmkn in #1728
• Mailchimp subscribe external by @Kicksta in #1736
• Refactor retina serializers by @jmsmkn in #1735
• Remove use of auth token with file uploads by @jmsmkn in #1739
• Add image context to viewer configuration by @chrisvanrun in #1733
• Add a valid OpenAPI3.0 schema by @jmsmkn in #1737
• Increase the allowed number of image ports in an hanging list by @chrisvanrun in #1732
• Add jinja2 to main dependencies by @jmsmkn in #1745
• Fix markdown editor preview by @jmsmkn in #1744
• Added link to stats page to footer by @amickan in #1748
• Replace xlrd with openpyxl by @jmsmkn in #1749
• Added contrast enhancement plugin to workstation configuration by @amickan in #1746
• Add option to display a link to the challenge forum by @jmsmkn in #1750
• Add API token management by @jmsmkn in #1740
• Added organizations display to profile page, made it optional by @amickan in #1752
• Fix json serialization by @jmsmkn in #1755
• Legacy retina code cleanup by @HarmvZ in #1753
• Add average successful job duration to algorithm API by @jmsmkn in #1756
• Extract image conversion module by @jmsmkn in #1758
• Add anchor to blog logo, allow poster video attribute by @jmsmkn in #1765
• Update pyproject.toml by @jmsmkn in #1757
• Remove all django and grand challenge dependencies from panimg by @jmsmkn in #1759
• Use pypi version of panimg by @jmsmkn in #1766
• Remove unused API attributes and endpoints by @jmsmkn in #1769
• Fix social media cards for subpages by @jmsmkn in #1768
• Added user profile information to verification admin by @amickan in #1771
• Added latest two blog posts to homepage by @amickan in #1767
• Upgrade pyupgrade by @jmsmkn in #1772
• Added extra validation for image type answers by @amickan in #1773
• delete error image from company listing and leave blank instead by @Kicksta in #1776
• Added citation field to publications and period celery task to automatically update pub metadata by @amickan in #1775
• Add non-image inputs to algorithms by @miriam-groeneveld in #1770
• Changed editable to True by @miriam-groeneveld in #1778
• Update algorithm docs by @MikeOverkamp-diag in #1779
• Fix slow query by @jmsmkn in #1783
• Update robots and add noindex to non-public objects by @jmsmkn in #1784
• Add a timeout on the URL checker by @jmsmkn in #1782
• Allow auth token to last longer than the session by @jmsmkn in #1780
• Correct typo by @chrisvanrun in #1785
• Add redirects app by @jmsmkn in #1787
• Add an interface list view by @jmsmkn in #1781
• 1790 luts by @miriam-groeneveld in #1793
• Add activity streams by @jmsmkn in #1791
• Forum notifications by @jmsmkn in #1794
• Set last read notification to creation time by @jmsmkn in #1795
• Default to using flexible inputs by @jmsmkn in #1796
• Updates Celery, Django and Sentry by @jmsmkn in #1797
• Temporarily increase client_max_body_size by @HarmvZ in #1799
• Revert "Temporarily increase client_max_body_size" by @jmsmkn in #1800
• Allow window-preset definitions with percentiles by @chrisvanrun in #1802
• Set ATOMIC_REQUESTS by @jmsmkn in #1806
• Apply celery tasks only on commit by @jmsmkn in #1809
• List all output interfaces on job detail page by @MikeOverkamp-diag in #1810
• Add horizontal navigation bars to challenges by @amickan in #1812
• Add option for client side rendered sidebars by @jmsmkn in #1813
• Added nav bars and highlighting where missing by @amickan in #1816
• Use .html for result list page, as contents are properly escaped by @MikeOverkamp-diag in #1817
• Icons to challenge nav-bar by @amickan in #1818
• Add service workbench integration by @jmsmkn in #1820
• Update algorithms.rst FAQ with ONNX Runtime pthread_setaffinity_np failed error by @silvandeleemput in #1821
• Stay on current menu item in reader studies after page refresh by @amickan in #1822
• Stay on current tab when page refreshes by @amickan in #1824
• Add distinct on algorithm form list by @jmsmkn in #1826
• Add examples for annotations by @miriam-groeneveld in #1825
• Add extra pre commit checks by @jmsmkn in #1827
• Move challenge admin tab into nav-bar by @amickan in #1819
• Use memory requirements from components by @jmsmkn in #1828
• Add probability to annotation types by @jmsmkn in #1829
• Update Panimg, Django, Pytest, Pytest-Django and Faker by @jmsmkn in #1831
• Algorithm documentation improvement by @HarmvZ in #1832
• Add ArchiveItem model by @jmsmkn in #1836
• fix typo by @miriam-groeneveld in #1837
• Remove archive images by @jmsmkn in #1838
• Add stdimg by @jmsmkn in #1839
• Update Django to 3.1.11 by @jmsmkn in #1842
• Fix silent fail when missing USER directive in Dockerfile of processor by @HarmvZ in #1845
• Redirect to questions tab by @jmsmkn in #1849
• Remove retina importer app by @jmsmkn in #1850
• Extract fixture creation by @jmsmkn in #1851
• Add logo and description fields for cards by @jmsmkn in #1846
• Remove unused test code by @jmsmkn in #1852
• Fix pytest cache sharing between container runs and add check for breakpoints by @jmsmkn in #1853
• 1843 mdd mdr by @Kicksta in #1854
• add tooltip when product has both MDD and MDR modules by @Kicksta in #1857
• Use docker buildx by @jmsmkn in #1858
• Add support for fds and fda files by @jmsmkn in #1859
• Remove cascade deletion on models by @jmsmkn in #1861
• Remove google groups and add history to pages by @jmsmkn in #1862
• Add job create API endpoint by @miriam-groeneveld in #1847
• Add flexible inputs for archives by @MikeOverkamp-diag in #1863
• Fixed breadcrumbs and title for algorithm update view by @amickan in #1867
• Added pagination to readerstudy list view by @amickan in #1870
• Fix super type determination by @jmsmkn in #1869
• Added pagination to algorithms, archives and readerstudies list view by @amickan in #1872
• add citing info and company explainer by @Kicksta in #1874
• Replace google maps and chart js with vega lite by @jmsmkn in #1876
• Tags for blog posts by @amickan in #1873
• Replace is staff views with global permissions by @jmsmkn in #1881
• Add blog post create and update views by @jmsmkn in #1880
• Notifications model by @amickan in #1841
• Add task do debug a worker by @jmsmkn in #1884
• Adds api endpoint for notifications by @amickan in #1885
• Add GitHub / webhooks app by @MikeOverkamp-diag in #1883
• Auto-jump to center of gravity by @miriam-groeneveld in #1886
• Adds filters for notifications by @amickan in #1887
• Push images to public ECR by @jmsmkn in #1890
• Migrate from docker hub to ECR public by @jmsmkn in #1893
• Remove images queue by @jmsmkn in #1895
• 1814 project air page by @Kicksta in #1894
• Do not change the token expiry by @jmsmkn in #1896
• Lock the upload session and files when importing by @jmsmkn in #1898
• Add CodeBuild app by @MikeOverkamp-diag in #1892
• Remove timeout override by @jmsmkn in #1899
• Save the access tokens by @jmsmkn in #1900
• Add codebuild badges and links by @jmsmkn in #1901
• Add build logs to algorithm image detail page by @jmsmkn in #1902
• Update blog post created date when published by @jmsmkn in #1913
• Run build images in correct queue and fix error handling by @jmsmkn in #1912
• Automatically set the users timezone by @jmsmkn in #1914
• Fix all error messages being sent to user by @jmsmkn in #1915
• Adds api view for subscription list by @amickan in #1889
• Pass the CloudFront private key as base64 encoded variable by @jmsmkn in #1917
• Limit submission size by @jmsmkn in #1919
• Add supplementary URL label and help text config by @jmsmkn in #1920
• Notifications for archive, reader study and algorithm access requests by @amickan in #1897
• Add AWS X-Ray by @jmsmkn in #1921
• Removes follows when forums, topics and posts are deleted by @amickan in #1923
• Adds list and create views for publications by @amickan in #1910
• Fixes author filter for publications by @amickan in #1925
• Refactor algorithm job creation by @jmsmkn in #1926
• Refactor component interface by @jmsmkn in #1927
• Add algorithm output files to evaluation input by @jmsmkn in #1928
• Add custom schema validation for interfaces by @jmsmkn in #1929
• Move evaluation creation to celery task by @jmsmkn in #1930
• Reduces db queries for challenge update celery task by @amickan in #1932
• Update all dependencies by @jmsmkn in #1933
• Challenge creation notifications by @amickan in #1936
• Separate component job out into tasks by @jmsmkn in #1938
• Fix citation cff by @jmsmkn in #1939
• Pin Celery due to Chord bug by @jmsmkn in #1940
• Reject celery messages by @jmsmkn in #1941
• Call deprovisioning directly by @jmsmkn in #1942
• Push container images to ECR by @jmsmkn in #1944
• Only set container ready once pushed by @jmsmkn in #1945
• Display correct input and output paths when uploading algorithm images by @nlessmann in #1946
• Add await task for component job by @jmsmkn in #1947
• Add AWS Batch backend by @jmsmkn in #1948
• Challenge participation request notifications by @amickan in #1937
• Creator filter for reader study answers by @amickan in #1951
• Add component execution on AWS batch by @jmsmkn in #1952
• Remove GDCM by @jmsmkn in #1856
• Notifications for new challenge admins by @amickan in #1949
• Markdown editor with preview and editor tabs by @HarmvZ in #1953
• Use context manager for products images zip import by @MikeOverkamp-diag in #1956
• Fix algorithm job status check by @nlessmann in #1959
• Add icon to show page visibility by @jmsmkn in #1963
• Allow blog editors to add authors by @amickan in #1957
• Handle missing follow_obj on subscription creation by @amickan in #1964
• Algorithm submission validation by @jmsmkn in #1965
• Adds tests for blog post author add permissions by @amickan in #1966
• Fix reader-study statistics showing db values by @chrisvanrun in #1916
• Air adapt about by @Kicksta in #1958
• Correct phase algorithm io validation by @jmsmkn in #1967
• Add relative path to serializer by @jmsmkn in #1968
• Add algorithm info to leaderboard and detail pages by @jmsmkn in #1969
• Improve algorithm submission flow by @jmsmkn in #1971
• Challenge evaluation notifications by @amickan in #1954
• Phase tab now active on evaluation detail page by @amickan in #1972
• Allow NUMBER and CHOICE answer types to be null when not required by @HarmvZ in #1973
• Failed job notifications by @amickan in #1974
• Allow algorithms to be submitted to different phases by @jmsmkn in #1976
• Do not send all job pks to the linked task by @jmsmkn in #1977
• Let users know when to expect their verification by by @jmsmkn in #1978
• Verified algorithm creation by @jmsmkn in #1979
• Failed image import notifications by @amickan in #1975
• Add mask as answer type by @miriam-groeneveld in #1982
• Reduces db calls from notification and follow list views by @amickan in #1980
• Run tasks in parallel by @jmsmkn in #1981
• Allow changing the submission limit period from 1 day by @jmsmkn in #1983
• Add view_logs permission by @jmsmkn in #1987
• 1985 air add archive files by @Kicksta in #1986
• Remove auto verification by @jmsmkn in #1989
• 1960 products blog by @Kicksta in #1962
• Update base container by @amickan in #1990
• Add editor permissions when using the job create API by @jmsmkn in #1991
• Fix 404 for 5XX errors by @jmsmkn in #1993
• Mocks csl test by @amickan in #1994
• New notification model by @amickan in #1988
• inherit markdown widget by @Kicksta in #1999
• Fixes archive item list search function by @amickan in #1998
• mock get_arxiv_csl by @amickan in #1996
• Deprecate action field by @amickan in #1997
• Support xz container uploads by @jmsmkn in #2000
• Fixes algorithm request notifications and notification clean up by @amickan in #2002
• Mocks get_doi_csl for publication creation test by @amickan in #2004
• Only add image to answer where the sessions match by @jmsmkn in #2005
• Fix adjust_algorithm_follows management command by @amickan in #2007
• change deafult hyperlink color by @Kicksta in #2006
• Remove action field from notification model by @amickan in #2008
• Migrate AWS Batch to Amazon ECS by @jmsmkn in #2010
• Remove output size limit by @jmsmkn in #2011
• Handle tasks that fail to start by @jmsmkn in #2012
• Handle Tasks provisioning capacity limit exceeded by @jmsmkn in #2013
• Use fluentd to split the logs into stdout and stderr streams by @jmsmkn in #2014
• Do not use sass 1.40.0 by @jmsmkn in #2016
• Fixes errors in notification send and print function by @amickan in #2015
• Improve question admin by @jmsmkn in #2019
• Improve CodeBuild and GitHub apps by @MikeOverkamp-diag in #2009
• Reduce number of db calls in process images api call by @jmsmkn in #2020
• Switch to ECS by default by @jmsmkn in #2021
• Small improvements to retina API enpoints by @HarmvZ in #1984
• Add short queue by @jmsmkn in #2023
• Cache the product list for 1 hour by @jmsmkn in #2025
• Run minio in nas mode by @jmsmkn in #2026
• Refactor challenge.html by @amickan in #2022
• Move documentation into the django context by @jmsmkn in #2029
• Integrate forums into challenge layout by @amickan in #2027
• Catch more ECS exceptions by @jmsmkn in #2032
• Extended config options to hide for plugins and tools by @miriam-groeneveld in #2031
• Add support for json celery SQS tasks by @jmsmkn in #2033
• Fix verification check before building from github message by @MikeOverkamp-diag in #2030
• Add event driven component execution by @jmsmkn in #2036
• Handle instance termination by @jmsmkn in #2037
• Use minio server again by @jmsmkn in #2038
• Adds general forum pk and slug to settings and context processors by @amickan in #2034
• Move evaluation tasks to ECS by @jmsmkn in #2040
• Use docker backend in development by @jmsmkn in #2041
• Unify log groups and handle tasks that finish before the sidecars start by @jmsmkn in #2042
• Delete marking long running tasks as failed by @jmsmkn in #2043
• Run algorithm job creation on long task queue by @jmsmkn in #2045
• Push application metrics to CloudWatch by @jmsmkn in #2046
• Conditionally determine visibility of columns in datatables by @HarmvZ in #2044
• Fix display of duplicate archive items by @jmsmkn in #2049
• Add zero values to metrics by @jmsmkn in #2050
• Add extra metadata fields to image model and cases list view by @HarmvZ in #2051
• Migrate to instance roles by @jmsmkn in #2055
• Partial for archive, algorithm, challenge and rs cards by @amickan in #2054
• Use SES API rather than SMTP by @jmsmkn in #2056
• Adds rounded egdes for challenge, algorithm, archive and rs cards by @amickan in #2052
• Adds 'about us' template and reorganizes footer by @amickan in #2057
• Implements a new navbar and removes blog post section from footer by @amickan in #2058
• Allows filtering on extra image metadata fields via API by @HarmvZ in #2061
• Use a delay queue rather than retry by @jmsmkn in #2059
• Docs buildx by @chrisvanrun in #2039
• Add a task role to the task by @jmsmkn in #2060
• Fixes external challenge card layout by @amickan in #2063
• Home page redesign by @amickan in #2062
• Fixes gc card styling by @amickan in #2065
• Upgrade to panimg 0.5.1 by @chrisvanrun in #2066
• Mention .nrrd in image-upload help text by @chrisvanrun in #2068
• Make help text for auto jump setting in viewer configuration scope reader studies by @chrisvanrun in #2064
• Adds documentation app and docpage model by @amickan in #2035
• Make all divs for jumbotron stats equally wide by @amickan in #2073
• Fixes home page news carousel blog choice by @amickan in #2072
• Add nested modality serializer field to image serializer by @HarmvZ in #2071
• add meta_social block to blogpost by @Kicksta in #2067
• Adds DocPage create and update views by @amickan in #2070
• Add S3 Multipart File Uploads by @jmsmkn in #2074
• Responsive home page layout by @amickan in #2077
• Add command for migrating patient and study models to fields by @HarmvZ in #2076
• Remove PublicMedia model by @jmsmkn in #2081
• Handle FileNotFound error for CodeBuild logs by @MikeOverkamp-diag in #2082
• Documentation page ordering by @amickan in #2080
• Consolidate minio instances by @jmsmkn in #2084
• Add object deletion and size checks by @jmsmkn in #2079
• Use acks late queues for wait_for_build_completion by @jmsmkn in #2087
• Migrate container image uploads to the S3 Multipart API by @jmsmkn in #2086
• Add git lfs install to Dockerfile by @MikeOverkamp-diag in #2085
• Adds create and update views for flatpages by @amickan in #2089
• Deprecate Patient and Study models by @HarmvZ in #2091
• Removes about page, links to about flatpage in navbar by @amickan in #2093
• Install and use git lfs by @MikeOverkamp-diag in #2096
• Remove staged file images info by @jmsmkn in #2097
• Migrate products import to S3 Multipart Uploads and Celery by @jmsmkn in #2088
• Migrate predictions files to S3 Multipart API by @jmsmkn in #2094
• Migrate interface file fields to S3 Multipart API by @jmsmkn in #2095
• Refactors image import by @jmsmkn in #2099
• Adds syntax highlighting by @amickan in #2098
• Migrate image uploads to S3 Multipart API and remove old widget by @jmsmkn in #2100
• Enable sentry only for create views and add more validation by @jmsmkn in #2101
• Standardise use of queryset filters by @jmsmkn in #2103
• Add pygments to production by @jmsmkn in #2106
• Minor layout changes for flatpages and documentation by @amickan in #2107
• Deprecate jqupload fields by @jmsmkn in #2104
• Add accelerated client by @jmsmkn in #2105
• Remove Patient and Studies models by @HarmvZ in #2102
• Adds full text search to documentation by @amickan in #2116
• Minor design changes for the news carousel by @amickan in #2113
• Remove deprecated fields by @jmsmkn in #2115
• Add user upload support to upload session create endpoint by @jmsmkn in #2110
• User upload cleanup by @jmsmkn in #2117
• Add basic VTK.js viewer by @HarmvZ in #2114
• Show search bar for all users by @amickan in #2119
• List editors on organization detail page by @amickan in #2122
• Maintain carousel img aspect ratio when sclaing by @amickan in #2121
• Set DATA_UPLOAD_MAX_NUMBER_FIELDS by @jmsmkn in #2125
• Add contact email to challenge by @amickan in #2124
• Update panimg by @jmsmkn in #2126
• Allow user targeting in answer copying by @jmsmkn in #2128
• Add validation for contact email by @amickan in #2129
• Truncate text earlier on small screens to accomodate for longer titles by @amickan in #2131
• Allow fullscreen for videos from own origin by @HarmvZ in #2133
• Minor documentation sidebar style changes by @amickan in #2135
• Show editors row only if there are organization editors by @amickan in #2130
• Add custom patients and studies endpoints by @HarmvZ in #2134
• Paginate upload deletion by @jmsmkn in #2136
• Change REDIS_HOSTNAME to REDIS_ENDPOINT by @jmsmkn in #2137
• Badges for algorithm cards by @amickan in #2127
• Add custom RetinaImageViewSet by @HarmvZ in #2139
• Setting for annotation counter by @miriam-groeneveld in #2141
• Check github repo name before url creation by @amickan in #2142
• Adds new interface kinds for algorithms by @amickan in #2140
• Add help text to repo name field in algorithm form by @MikeOverkamp-diag in #2143
• Sort images by @Kicksta in #2144
• Adds new outputs to job detail view by @amickan in #2147
• Clarify the count by @jmsmkn in #2146
• Add js and html for info modal for algorithm and challenge cards by @amickan in #2148
• Fix answer image creation for the new API by @jmsmkn in #2149
• Add PDF download column to job list by @amickan in #2150
• Adds chart output to results list view by @amickan in #2152
• Remove retina thumbnail endpoints by @HarmvZ in #2151
• Remove old file upload endpoints by @jmsmkn in #2154
• Remove old image upload models by @jmsmkn in #2155
• Remove jqfileupload app by @jmsmkn in #2156
• Turn off showProgressDetails by @jmsmkn in #2159
• Update linked repo workflow by @MikeOverkamp-diag in #2161
• Add thumbnails to results list, make table responsive by @amickan in #2160
• Removes quotes around string outputs and adds max-width to thumbnails by @amickan in #2162
• Allow blank repo names by @jmsmkn in #2165
• Add verification to superuser script by @amickan in #2167
• Adds + sign to user count in jumbotron by @amickan in #2168
• Adds new mimetype for sqreg files by @amickan in #2170
• Reduce db calls for notification list by @amickan in #2172
• Use viewer rather than workstation in forms by @jmsmkn in #2173
• Handle immediately exiting containers by @jmsmkn in #2174
• Update workstation help text by @jmsmkn in #2176
• Add website url validation to user profile by @amickan in #2177
• Add model facts fields to algorithm by @amickan in #2171
• Add newsletter sign-up form by @amickan in #2179
• Trigger resize event when toggling extra results columns by @amickan in #2178
• Update dependencies by @jmsmkn in #2180
• Only prefetch GFKs for the current page by @jmsmkn in #2181
• Upgrade to Django 3.2 by @jmsmkn in #2183
• make the filter 'other' work for modalities and subspecialities by @Kicksta in #2182
• Prefetch after pagination for subscription view by @amickan in #2186
• Fix google sign ups by @jmsmkn in #2188
• Fix no challenge pages by @jmsmkn in #2189
• Adds help button to navbar by @amickan in #2191
• Added more mimetypes for sqreg files by @miriam-groeneveld in #2192
• Automatically remove access request notifications by @nlessmann in #2193
• Add shared memory by @jmsmkn in #2195
• Changes sorting of viewer and viewer config to sort by title. by @miriam-groeneveld in #2194
• Adds publication citation and optional image to info page by @amickan in #2190
• Handle unset names by @jmsmkn in #2197
• Add new default internal challenge view by @amickan in #2196
• Update navbar by @Kicksta in #2185
• Adds status bagde to challenge cards by @amickan in #2198
• Reduce the number of options for the archive item update form by @jmsmkn in #2199
• Fix help text of publications field by @nlessmann in #2200
• Add index on created by @jmsmkn in #2204
• Adds support for file type outputs by @amickan in #2203
• Update dependencies by @jmsmkn in #2205
• Add support for isolated deployments by @jmsmkn in #2202
• Add the algorithm version to the evaluation detail by @jmsmkn in #2206
• Use phase start and end dates for challenge status badge by @amickan in #2201
• Add algorithm version to detail view by @amickan in #2209
• Challenge creation for verified users only by @amickan in #2208
• Automatically verify demo and algorithm dummy users by @amickan in #2210
• Fix outdated model field references in submission template by @amickan in #2211
• Add link-images property to viewer configurations by @chrisvanrun in #2207
• Update challenge phase settings by @amickan in #2212
• Increase task expiration time by @jmsmkn in #2213
• Add warning for missing method and submission dates to phase create form by @amickan in #2214
• Add chart, pdf and thumbnail outputs to evaluation detail by @amickan in #2215
• Add link_images to serializer of workstation configs by @chrisvanrun in #2216
• Add validation on Phase model and search fields to phase admin by @amickan in #2218
• Add UPLOADS_TIMEOUT_DAYS by @jmsmkn in #2217
• Remove flex uploads option by @jmsmkn in #2219
• Add VERIFICATIONS_REVIEW_PERIOD_DAYS by @jmsmkn in #2220
• Enable text-wrap on challenge card badges by @amickan in #2223
• add sort options for product list by @Kicksta in #2225
• Return 404 for leaderboard redirect if challenge has no phase by @amickan in #2224
• Fix challenge query in leaderboard redirect by @amickan in #2229
• Check for existence of creator before querying for team memership by @amickan in #2228
• Deactive duplicate users by @jmsmkn in #2230
• Add ALGORITHMS_JOB_BATCH_LIMIT by @jmsmkn in #2233
• Add configurable inference time limits per phase by @jmsmkn in #2234
• Make get zip file task idempotent by @amickan in #2222
• Add more fields to ghwm admin by @jmsmkn in #2235
• Add more items to the reader study admin by @jmsmkn in #2239
• Clarify invalid token behaviour by @jmsmkn in #2240
• Add challenge support to the help dropdown by @jmsmkn in #2241
• Add email model by @amickan in #2236
• Don't raise a 404 if user does not have a GitHub token by @MikeOverkamp-diag in #2244
• Count displayed subscriptions only by @amickan in #2238
• Remove builds tab by @jmsmkn in #2245
• Raise Http404 on challenge not found by @jmsmkn in #2246
• Replace feature overview images by @amickan in #2248
• Basic implementation of a Cornerstone viewer by @HarmvZ in #2242
• Add additional logging for get_zipfile by @MikeOverkamp-diag in #2250
• Small evaluation improvements by @jmsmkn in #2251
• Put highlighted challenges first by @jmsmkn in #2252
• Cancel in progress CI jobs on multiple commits by @jmsmkn in #2253
• Correct DateTimeInput format by @amickan in #2254
• Improve GitHub clone error handling by @jmsmkn in #2256
• Small evaluation fixes by @jmsmkn in #2257
• Update UploadSession serializer and add ArchiveItem serializer by @amickan in #2249
• Fix api cases tests by @amickan in #2258
• Add reader-study setting for answer roll-over by @chrisvanrun in #2255
• Fix evaluation query for algorithm submission checks by @amickan in #2260
• Increase email batch size by @amickan in #2261
• Consolidate evaluation admin by @jmsmkn in #2263
• Make license detection dynamic by @jmsmkn in #2262
• Upgrades postgres by @jmsmkn in #2264
• Add archive item to UploadSession serializer by @amickan in #2259
• Deprecate _IMAGE answer types by @jmsmkn in #2267
• Adds interface slug to interface list by @amickan in #2270
• Removes _IMAGE answer types by @jmsmkn in #2269
• Enable archive item updating through api by @amickan in #2268
• Update readerstudy_detail.html by @chrisvanrun in #2274
• Handle request errors in CSL update task by @jmsmkn in #2275
• Documentation sidebar level 4 by @amickan in #2276
• Automatically set the site name by @jmsmkn in #2277
• Add AWS_S3_DEFAULT_STORAGE_CLASS option by @jmsmkn in #2278
• Handle type errors in json extraction by @jmsmkn in #2279
• Adds automatic access request handling to reader studies, algos and archives by @amickan in #2221
• Viewer config tooltips by @chrisvanrun in #2273
• Run create_download synchronously by @jmsmkn in #2284
• Deprecate require_participant_review by @amickan in #2283
• add line answertype by @miriam-groeneveld in #2285
• Add sponsors section by @jmsmkn in #2286
• Use stable version of black by @jmsmkn in #2287
• Add built on aws logo by @jmsmkn in #2289
• Fix notification filter by @amickan in #2290
• Create dependency-update.yml by @jmsmkn in #2291
• Update dependencies by @jmsmkn in #2295
• Fix create download by @jmsmkn in #2296
• Upgrade Celery by @jmsmkn in #2297
• Automated dependency update by @github-actions in #2298
• Adds option to hide a challenge phase by @amickan in #2282
• Add isort by @jmsmkn in #2288
• Automated dependency update by @github-actions in #2300
• Use OIDC auth by @jmsmkn in #2301
• Update schema of line answer types by @miriam-groeneveld in #2303
• Paginate session deletion by @jmsmkn in #2302
• fix typo: seperate -> separate by @kaczmarj in #2304
• Add algorithm_image to SubmissionSerializer by @jmsmkn in #2305
• Use ComponentInterfaceValues in reader studies through Display Sets by @MikeOverkamp-diag in #2271
• Check for visible phases in challenge topbar by @amickan in #2308
• Automated dependency update by @github-actions in #2309
• Force use of object store for variable length json objects by @jmsmkn in #2310
• Validate the algorithm inputs and outputs are disjoint by @jmsmkn in #2311
• Automated dependency update by @github-actions in #2313
• Add filesystem perparation task by @jmsmkn in #2314
• Improve performance of the file system preparation method by @jmsmkn in #2318
• Add display set to answer serializer by @MikeOverkamp-diag in #2317
• Pass the TLS certificates via environment variables by @jmsmkn in #2320
• Hanging Protocol App by @amickan in #2315
• Fix ground truth for display sets by @MikeOverkamp-diag in #2321
• Challenge request form by @amickan in #2312
• Add order field for display sets by @MikeOverkamp-diag in #2319
• Allow EFS file customisation by @jmsmkn in #2323
• Update display set api by @MikeOverkamp-diag in #2324
• Remove challenge create view by @amickan in #2326
• Allow display set deletion in UI by @MikeOverkamp-diag in #2325
• Add image port mapping field by @MikeOverkamp-diag in #2322
• Increase default for compute costs and add inference help text by @amickan in #2329
• Hanging protocol serializer field by @amickan in #2327
• Automated dependency update by @github-actions in #2330
• Fix image permissions by @MikeOverkamp-diag in #2331
• Add view archive item button by @amickan in #2328
• Fix verification email by @MikeOverkamp-diag in #2332
• Add api_url to display set serializer by @MikeOverkamp-diag in #2333
• fix answer patch by @miriam-groeneveld in #2334
• Fix progress for display sets by @MikeOverkamp-diag in #2335
• Allow emptying of field value for display sets by @MikeOverkamp-diag in #2336
• Fix number of cases in reader study detail view by @MikeOverkamp-diag in #2337
• Add view_content field to archive, algorithm and reader study serializers by @HarmvZ in #2338
• Add view_content field to serializers by @amickan in #2340
• Improve display set view by @MikeOverkamp-diag in #2342
• Add an admin method to reevaluate submissions by @jmsmkn in #2345
• Set view_content to empty dict explicitly if empty by @amickan in #2344
• Challenge request additions by @amickan in #2347
• Allow copying of archive items to display sets by @MikeOverkamp-diag in #2346
• Allow view_content without hanging protocol by @MikeOverkamp-diag in #2350
• Make the Archive API more consistent by @jmsmkn in #2348
• Automated dependency update by @github-actions in #2351
• Allow each viewport only once in hanging protocol by @MikeOverkamp-diag in #2352
• Downgrade werkzeug for django-extensions by @MikeOverkamp-diag in #2354
• Cache interfaces indefinitely by @MikeOverkamp-diag in #2353
• Fix non editable display set values in list view by @MikeOverkamp-diag in #2355
• Add user field to group admin by @amickan in #2349
• Ensure JSONFields are not set to null by @MikeOverkamp-diag in #2356
• Add data license and long term commitment fields to Challenge request form by @amickan in #2357
• Use filter in ds ground truth tasks to prevent DoesNotExist by @MikeOverkamp-diag in #2358
• Speed up display set list view by @MikeOverkamp-diag in #2359
• Don't cache is_editable as aggressively by @MikeOverkamp-diag in #2360
• Make ds values field read only in admin by @MikeOverkamp-diag in #2362
• Add reader study modified time to ds cache key by @MikeOverkamp-diag in #2364
• Make creator field of hanging protocol admin read only by @amickan in #2368
• Reduce number of queries in ds list view by @MikeOverkamp-diag in #2369
• Add management command to migrate to old version of cirrus by @MikeOverkamp-diag in #2371
• Make display sets the default setup by @MikeOverkamp-diag in #2370
• Add migration to move reader studies to new setup by @MikeOverkamp-diag in #2361
• Fix failing test by @MikeOverkamp-diag in #2372
• Add algorithm view_content and hanging_protocol to job serializer by @MikeOverkamp-diag in #2373
• Update case_text serializer by @MikeOverkamp-diag in #2374
• Consistent hanging protocol API by @jmsmkn in #2375
• Fix key-errors when serializing case_text for reader study by @chrisvanrun in #2377
• Use image name for case texts by @MikeOverkamp-diag in #2380
• Allow adding of multiple values to set in archive item update task by @HarmvZ in #2381
• Use proper view_content format in migration method by @MikeOverkamp-diag in #2382
• Fix file-kind CIV permissions for archive items by @HarmvZ in #2384
• Fix display set search fields by @MikeOverkamp-diag in #2386
• Update evaluation task routing by @jmsmkn in #2387
• Improve challenge request help texts by @amickan in #2388
• Several small fixes by @jmsmkn in #2389
• Update dependencies by @jmsmkn in #2391
• Pull container images from the registry by @jmsmkn in #2390
• Split interface overview into inputs and outputs by @jmsmkn in #2395
• Properly handle unanswered without reader study by @MikeOverkamp-diag in #2399
• Disallow slug editing for pages by @jmsmkn in #2393
• Remove display set migration by @jmsmkn in #2400
• Hanging protocol visualization by @amickan in #2367
• Enable html emails in admin by @amickan in #2398
• Automated dependency update by @github-actions in #2405
• Fix markdowneditor widget for admin by @amickan in #2402
• Ask for inputs and outputs in challenge request by @amickan in #2403
• Add display-set filter to answer by @chrisvanrun in #2396
• Add disjoint interface validation to forms by @jmsmkn in #2408
• Email create, update and detail views by @amickan in #2406
• Small improvements by @Kicksta in #2411
• Challenge request admin by @amickan in #2410
• Add edit duration fields to Answer model by @MikeOverkamp-diag in #2407
• Catch validation error if challenge short name already exists by @amickan in #2414
• Add index for display sets by @MikeOverkamp-diag in #2413
• Add link to download the predictions.json file by @jmsmkn in #2417
• Add validation for hl shuffling with case navigation by @MikeOverkamp-diag in #2415
• Challenge submission form doi field by @amickan in #2419
• Make "True" comparison case insensitive by @pkcakeout in #2421
• Exclude slug from historical record by @jmsmkn in #2423
• Htmx by @amickan in #2422
• Challenge request start and end date validation by @amickan in #2425
• Add retries for container push by @jmsmkn in #2424
• Vendor cdnjs files by @jmsmkn in #2426
• Fix leaderboard sorting by date by @amickan in #2429
• Remove observable integration by @jmsmkn in #2427
• Vendor uppy by @jmsmkn in #2428
• Add extra viewports and add new fields for custom hanging protocols by @HarmvZ in #2430
• Fix reader study copying by @MikeOverkamp-diag in #2432
• Add opacity and parent_id fields to viewitem definition in hanging protocol. by @HarmvZ in #2434
• Add check for protected items before reader study deletion by @jmsmkn in #2435
• Custom identifier model field by @amickan in #2433
• Challenge type badge by @amickan in #2437
• Deprecate images by @MikeOverkamp-diag in #2438
• Check for expired github token by @MikeOverkamp-diag in #2441
• Automated dependency update by @github-actions in #2439
• Add exports for images and display sets by @MikeOverkamp-diag in #2443
• Remove deprecated fields by @jmsmkn in #2440
• Improve performance of db query by @jmsmkn in #2444
• Ensure no duplicate CIs for archive items by @MikeOverkamp-diag in #2445
• Add admin search fields and filters by @amickan in #2446
• Add more information to verification form by @amickan in #2448
• Update dependencies by @jmsmkn in #2447
• Reduce maximum algorithm duration by @jmsmkn in #2449
• Add index to display set api detail view by @amickan in #2450
• Fix archive item image upload by @amickan in #2454
• Remove unused test code by @jmsmkn in #2453
• Show first public phase to not logged in users by @amickan in #2455
• Enable editors to view users unanswered ds by @amickan in #2452
• Update crane and add SageMaker shim by @jmsmkn in #2456
• Button for admin view by @amickan in #2457
• Buttons to open readerstudy at specific display set by @amickan in #2460

New Contributors

• @chrisvanrun made their first contribution in #1681
• @github-actions made their first contribution in #2298
• @kaczmarj made their first contribution in #2304

Full Changelog: v2020.12...v2022.06