Added files.

CONTRIBUTING.md

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+Contributing
+------------
+
+Install the development environment:
+
+```sh
+$ pip install virtualenv  # might require sudo/admin privileges
+$ git clone https://github.com/clld/clld.git  # you may also clone a suitable fork
+$ cd amsd
+$ python -m virtualenv .venv
+$ source .venv/bin/activate  # Windows: .venv\Scripts\activate.bat
+$ pip install -r requirements.txt  # installs the cloned version with dev-tools in development mode
+```
+
+Then create a database:
+
+```sh
+$ su - postgres
+$ createdb amsd
+```
+
+and initialize it, either
+- loading a dump of the production DB, using the app's `load_db` task from the
+`appconfig` package
+- or by running `python amsd/scripts/initializedb.py development.ini` (may require access to the appropriate data repository).
+
+Now you should be able to run the tests:
+
+```sh
+$ pytest
+```

MANIFEST.in

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+include *.txt *.ini *.cfg *.rst
+recursive-include amsd *.ico *.png *.css *.gif *.jpg *.pt *.txt *.mak *.mako *.js *.html *.xml

alembic.ini

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+[alembic]
+script_location = migrations
+
+# set to 'true' to run the environment during
+# the 'revision' command, regardless of autogenerate
+# revision_environment = false
+
+sqlalchemy.url = postgresql://postgres@/amsd
+
+[production]
+script_location = migrations
+sqlalchemy.url = postgresql://amsd@/amsd
+
+# Logging configuration
+[loggers]
+keys = root,sqlalchemy,alembic
+
+[handlers]
+keys = console
+
+[formatters]
+keys = generic
+
+[logger_root]
+level = WARN
+handlers = console
+qualname =
+
+[logger_sqlalchemy]
+level = WARN
+handlers =
+qualname = sqlalchemy.engine
+
+[logger_alembic]
+level = INFO
+handlers =
+qualname = alembic
+
+[handler_console]
+class = StreamHandler
+args = (sys.stderr,)
+level = NOTSET
+formatter = generic
+
+[formatter_generic]
+format = %(levelname)-5.5s [%(name)s] %(message)s
+datefmt = %H:%M:%S

amsd/__init__.py

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+from pyramid.config import Configurator
+
+# we must make sure custom models are known at database initialization!
+from amsd import models
+
+
+def main(global_config, **settings):
+    """ This function returns a Pyramid WSGI application.
+    """
+    config = Configurator(settings=settings)
+    config.include('clldmpg')
+    return config.make_wsgi_app()

amsd/adapters.py

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+def includeme(config):
+    pass

amsd/appconf.ini

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+[clld]
+menuitems_list = contributions parameters languages contributors sentences sources
+app_template = amsd.mako
+github_repos = clld/amsd
+pacific_centered_maps = 0
+
+[mako]
+directories_list = amsd:templates clldmpg:templates clld:web/templates

amsd/assets.py

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+from clld.web.assets import environment
+from clldutils.path import Path
+
+import amsd
+
+
+environment.append_path(
+    Path(amsd.__file__).parent.joinpath('static').as_posix(),
+    url='/amsd:static/')
+environment.load_path = list(reversed(environment.load_path))

amsd/datatables.py

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+def includeme(config):
+    pass

amsd/maps.py

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+def includeme(config):
+    pass

amsd/models.py

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+from zope.interface import implementer
+from sqlalchemy import (
+    Column,
+    String,
+    Unicode,
+    Integer,
+    Boolean,
+    ForeignKey,
+    UniqueConstraint,
+)
+from sqlalchemy.orm import relationship, backref
+from sqlalchemy.ext.declarative import declared_attr
+from sqlalchemy.ext.hybrid import hybrid_property
+
+from clld import interfaces
+from clld.db.meta import Base, CustomModelMixin
+#from clld.db.models.common import Language
+
+
+#-----------------------------------------------------------------------------
+# specialized common mapper classes
+#-----------------------------------------------------------------------------
+#@implementer(interfaces.ILanguage)
+#class amsdLanguage(CustomModelMixin, Language):
+#    pk = Column(Integer, ForeignKey('language.pk'), primary_key=True)

amsd/scripts/__init__.py

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+#

amsd/scripts/initializedb.py

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+from __future__ import unicode_literals
+import sys
+
+from clld.scripts.util import initializedb, Data
+from clld.db.meta import DBSession
+from clld.db.models import common
+
+import amsd
+from amsd import models
+
+
+def main(args):
+    data = Data()
+
+    dataset = common.Dataset(
+        id=amsd.__name__,
+        name="--TODO--",
+        publisher_name="Max Planck Institute for the Science of Human History",
+        publisher_place="Jena",
+        publisher_url="http://www.shh.mpg.de",
+        license="http://creativecommons.org/licenses/by/4.0/",
+        domain='amsd.clld.org',
+        jsondata={
+            'license_icon': 'cc-by.png',
+            'license_name': 'Creative Commons Attribution 4.0 International License'})
+
+    DBSession.add(dataset)
+
+    #
+    # TODO: add editors!
+    #
+
+def prime_cache(args):
+    """If data needs to be denormalized for lookup, do that here.
+    This procedure should be separate from the db initialization, because
+    it will have to be run periodically whenever data has been updated.
+    """
+
+
+if __name__ == '__main__':  # pragma: no cover
+    initializedb(create=main, prime_cache=prime_cache)
+    sys.exit(0)

amsd/static/project.css

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+

amsd/static/project.js

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+

amsd/templates/amsd.mako

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+<%inherit file="app.mako"/>
+
+<%block name="brand">
+    <a href="${request.resource_url(request.dataset)}" class="brand">${request.dataset.name}</a>
+</%block>
+
+${next.body()}

amsd/templates/dataset/detail_html.mako

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+<%inherit file="../home_comp.mako"/>
+
+<h2>Welcome to the Australian Message Stick Database</h2>
+
+<p class="lead">
+    Message sticks are carved graphic devices from Indigenous Australia, used to
+    facilitate long-distance communication. This database is a digital
+    repository of 1024 message sticks and associated metadata located in museums
+    across the world. It also stores photographs and sketches of messages that
+    are no longer extant. The database is searchable via 30 fields, including
+    linguistic area, semantic domain, motifs and source. The full dataset will
+    be migrated to this location soon. In the meantime click <a
+        href="https://cdhrsys.anu.edu.au/occams_v1c/index.php" target="_blank">here</a>
+    to visit the beta version and the Help link for access instructions.
+</p>
+
+<h2>Example</h2>
+<img width="180" height="180"
+     src="${request.static_url('amsd:static/1520350500.png')}" class="image"/>
+
+<p>
+    The Australian Message Stick Database contains data licensed under various
+    conditions depending on agreements with museums (see individual records for
+    details). No restricted or sacred items are included. It has been developed
+    by The Mint Research Group at The Max Planck Institute for the Science of
+    Human History.
+</p>
+
+<h3>How to access the Australian Message Sticks Database</h3>
+<p>The beta version can be accessed from <a
+        href="https://cdhrsys.anu.edu.au/occams_v1c/index.php">https://cdhrsys.anu.edu.au/occams_v1c/index.php</a>.<br/>
+    Please contact Piers Kelly (kelly [AT] shh.mpg.de) for log-in credentials or
+    for a zipped copy of the database.
+</p>
+
+<div class="row-fluid">
+    <div class="span4 well well-small">
+        <h3>How to cite:</h3>
+        <p>
+            Kelly, Piers (ed.). 2018. The Australian Message Stick Database
+            (beta version)
+        </p>
+    </div>
+    <div class="span4" style="padding: 20px; text-align: center;">
+        <img width="200" height="200"
+             src="${request.static_url('amsd:static/amsd_logo.png')}"
+             class="image"/>
+    </div>
+    <div class="span4">
+        <table class="table table-nonfluid">
+            <tbody>
+            <tr>
+                <th>Artefacts</th>
+                <td class="right">1024</td>
+            </tr>
+            <tr>
+                <th>Linguistic areas</th>
+                <td class="right">54</td>
+            </tr>
+            <tr>
+                <th>Motifs</th>
+                <td class="right">37</td>
+            </tr>
+            </tbody>
+        </table>
+    </div>
+</div>
+

amsd/tests/conftest.py

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+from amsd import models
+import pytest
+
+pytest_plugins = ['clld']

amsd/tests/test_functional.py

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+def test_home(app):
+    app.get_html('/legal', status=200)

amsd/tests/test_scripts.py

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+# coding: utf8
+from __future__ import unicode_literals, print_function, division
+
+from amsd.scripts.initializedb import main, prime_cache
+
+
+def test_dbinit(db):
+    main(None)
+    prime_cache(None)

amsd/tests/test_selenium.py

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+from __future__ import unicode_literals
+import time
+
+
+def test_ui(selenium):
+    selenium.browser.get(selenium.url('/download'))
+    time.sleep(3)

amsd/util.py

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+"""
+This module will be available in templates as ``u``.
+
+This module is also used to lookup custom template context providers, i.e. functions
+following a special naming convention which are called to update the template context
+before rendering resource's detail or index views.
+"""

amsd/views.py

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+#

data/README.txt

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+Files in this directory can be conveniently accessed from scripts using
+
+    args.data_file('path', 'relative', 'to', 'here')

development.ini

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+[app:main]
+use = egg:amsd
+
+pyramid.reload_templates = true
+pyramid.debug_authorization = false
+pyramid.debug_notfound = false
+pyramid.debug_routematch = false
+pyramid.default_locale_name = en
+pyramid.includes =
+    pyramid_tm
+sqlalchemy.url = postgresql://chrzyki@/amsd
+
+[server:main]
+use = egg:waitress#main
+host = 127.0.0.1
+port = 6543
+
+[loggers]
+keys = root, amsd
+
+[handlers]
+keys = console
+
+[formatters]
+keys = generic
+
+[logger_root]
+level = INFO
+handlers = console
+
+[logger_amsd]
+level = DEBUG
+handlers =
+qualname = amsd
+
+[handler_console]
+class = StreamHandler
+args = (sys.stderr,)
+level = NOTSET
+formatter = generic
+
+[formatter_generic]
+format = %(asctime)s %(levelname)-5.5s [%(name)s][%(threadName)s] %(message)s