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Issues: clinical-genomics-uppsala/Twist_DNA

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20 Open 11 Closed
20 Open 11 Closed
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Issues list

Rename config variable to move_fastq enhancement New feature or request good first issue Good for newcomers
#195 opened Jun 24, 2021 by Smeds
1
Missing folder DATA
#191 opened Jun 18, 2021 by Smeds
Split up into multiple jobs
#190 opened Jun 18, 2021 by Smeds
Remove use of original sample sheet enhancement New feature or request invalid This doesn't seem right
#189 opened Jun 18, 2021 by jonca79
@Smeds
start using samples.tsv instead
#177 opened Jun 7, 2021 by Smeds
demultiplexing rule shouldn't be activated when a runfolder isn't configured enhancement New feature or request
#144 opened May 21, 2021 by Smeds
cnv kit image invalid This doesn't seem right
#141 opened May 20, 2021 by Smeds
@jonca79
Add manta to DNA-fusion calling enhancement New feature or request
#108 opened Apr 21, 2021 by jonca79
Add UMI test workflow enhancement New feature or request
#104 opened Apr 14, 2021 by jonca79
Make a hotspot specific caller. enhancement New feature or request
#99 opened Apr 12, 2021 by jonca79
Missed EGFR mutation (T790M) enhancement New feature or request
#98 opened Apr 12, 2021 by jonca79
Use fastqc wrapper enhancement New feature or request good first issue Good for newcomers
#80 opened Mar 16, 2021 by Smeds
1
Setup dry-run enhancement New feature or request
#71 opened Mar 2, 2021 by Smeds
Do not merge fastq-files before alignment + align in parallel enhancement New feature or request
#62 opened Feb 15, 2021 by jonca79
Fix mutect2 example documentation Improvements or additions to documentation
#59 opened Feb 8, 2021 by Smeds
Fix example bam index documentation Improvements or additions to documentation
#58 opened Feb 8, 2021 by Smeds
Freebayes with multi-thread support enhancement New feature or request
#57 opened Feb 8, 2021 by Smeds
Try pipe option enhancement New feature or request good first issue Good for newcomers
#52 opened Feb 5, 2021 by Smeds
Update to match actually installed softwares
#47 opened Feb 2, 2021 by Smeds
@Smeds
Update documentation documentation Improvements or additions to documentation
#42 opened Feb 1, 2021 by Smeds
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