improved N50

chhylp123 · Jan 14, 2020 · c63ce67 · c63ce67
1 parent 387c64c
commit c63ce67
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Showing 4 changed files with 687 additions and 40 deletions.
diff --git a/CommandLines.cpp b/CommandLines.cpp
@@ -46,6 +46,7 @@ void Print_H(hifiasm_opt_t* asm_opt)
 
 void init_opt(hifiasm_opt_t* asm_opt)
 {
+    asm_opt->coverage = -1;
     asm_opt->num_reads = 0;
     asm_opt->read_file_names = NULL;
     asm_opt->output_file_name = (char*)(DEFAULT_OUTPUT);

diff --git a/CommandLines.h b/CommandLines.h
@@ -36,6 +36,7 @@ typedef struct {
     long long num_bases;
     long long num_corrected_bases;
     long long num_recorrected_bases;
+    long long coverage;
 } hifiasm_opt_t;
 
 extern hifiasm_opt_t asm_opt;