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Restructured pdb reader and added alpha carbon argument #177

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Restructured pdb reader and added alpha carbon argument

Restructured pdb reader and added alpha carbon argument #177

Run time

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Job Run time
Testing (3.9)
3m 23s
Testing (3.10)
3m 23s
Testing (3.11)
3m 26s
Testing (3.12)
3m 38s
Testing (3.13)
3m 26s
17m 16s