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Implement covariant kernels #40

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merged 33 commits into from
Jul 6, 2024
Merged

Implement covariant kernels #40

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4e101ea
new covariant kernels implementation
cgarling Jun 28, 2024
7be2b11
add `cov_mult` to `GaussianPSFCovariant`
cgarling Jun 30, 2024
82ac0e9
`kernels_example.jl` fully working
cgarling Jun 30, 2024
64a1972
clear some calls from `mcmc_test.jl`
cgarling Jun 30, 2024
bc99eda
break code out into generic `gaussian_int_general`
cgarling Jul 1, 2024
458f407
Add `@turbo` to `addstar!` for `PixelSpaceKernel`
cgarling Jul 1, 2024
69233c9
replace test isochrone
cgarling Jul 1, 2024
c8abe52
unfold `bin_cmd_smooth` in next pass
cgarling Jul 1, 2024
a777b66
covariant kernel now integrated
cgarling Jul 2, 2024
a98a37b
slight cleanup `simulate.jl`
cgarling Jul 3, 2024
e9ada4a
Increase resolution in `smooth_template.jl`
cgarling Jul 3, 2024
9b4cfde
Add `@turbo` to `addstar!` for `RealSpaceKernel`
cgarling Jul 3, 2024
c62f63b
add new tests into `runtests.jl`
cgarling Jul 3, 2024
ec7f459
`calculate_edges` checks ranges for input `edges`
cgarling Jul 3, 2024
c002a0a
Add adaptive point spacing in `mini_spacing` call
cgarling Jul 3, 2024
ba1a186
also send calculated `edges` directly out
cgarling Jul 3, 2024
97c35b9
turn off interpolation in `imshow` calls
cgarling Jul 3, 2024
4d51820
remove old code
cgarling Jul 3, 2024
b1a4da1
guarantee that the pixel offsets are always `>=1`
cgarling Jul 3, 2024
03f9ad2
move interp option to `plt.rc`
cgarling Jul 3, 2024
3eea482
increase `size` for `GaussianPSFCovariant`
cgarling Jul 3, 2024
def1f57
example alpha
cgarling Jul 3, 2024
585a950
remove global type declarations support julia1.7
cgarling Jul 4, 2024
1bc8875
update `addstar!` step
cgarling Jul 4, 2024
feb8053
Fix `GaussianPSFCovariant`
cgarling Jul 5, 2024
9409d76
add more template tests
cgarling Jul 5, 2024
03731d6
update docs and examples
cgarling Jul 6, 2024
e2a228d
update `fitting1.ipynb` example
cgarling Jul 6, 2024
6679bbe
more docs
cgarling Jul 6, 2024
a745059
remove `cmdpoint.jl`
cgarling Jul 6, 2024
4a009b9
try to add macos and windows to CI with julia v1
cgarling Jul 6, 2024
65fac33
add arch
cgarling Jul 6, 2024
587bc52
fix `template_test.jl`
cgarling Jul 6, 2024
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7 changes: 7 additions & 0 deletions .github/workflows/CI.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,13 @@ jobs:
- ubuntu-latest
arch:
- x64
include:
- os: macos-latest
arch: x64
version: '1'
- os: windows-latest
arch: x64
version: '1'
steps:
- uses: actions/checkout@v4
- uses: julia-actions/setup-julia@v2
Expand Down
6 changes: 5 additions & 1 deletion Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,7 @@ Roots = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
VectorizationBase = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"

[weakdeps]
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
Expand All @@ -33,6 +34,7 @@ DataFramesExt = "DataFrames"

[compat]
DataFrames = "1"
DelimitedFiles = "<0.0.1, 1"
Distributions = "0.25"
Documenter = "1"
DynamicHMC = "3.4.2" # Changed stack_posterior_matrices order https://github.com/tpapp/DynamicHMC.jl/pull/175
Expand All @@ -57,10 +59,12 @@ StaticArrays = "1"
StatsBase = "0.32, 0.33, 0.34"
Test = "<0.0.1, 1"
TypedTables = "1"
VectorizationBase = "0.21"
julia = "1.7"

[extras]
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb"
Expand All @@ -76,4 +80,4 @@ Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9"

[targets]
test = ["DataFrames", "Distributions", "Documenter", "DynamicHMC", "InitialMassFunctions", "LinearAlgebra", "MCMCChains", "QuadGK", "Random", "SafeTestsets", "StableRNGs", "StaticArrays", "Test", "TypedTables"]
test = ["DataFrames", "DelimitedFiles", "Distributions", "Documenter", "DynamicHMC", "InitialMassFunctions", "LinearAlgebra", "MCMCChains", "QuadGK", "Random", "SafeTestsets", "StableRNGs", "StaticArrays", "Test", "TypedTables"]
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