exportBins(..., format = "vcf") did not add meta-data information for…

… field `END` to the VCF file header [#120]
ccagc · Jul 24, 2024 · 6e14cda · 6e14cda
1 parent a604966
commit 6e14cda
Show file tree

Hide file tree

Showing 3 changed files with 10 additions and 1 deletion.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: QDNAseq
-Version: 1.41.2
+Version: 1.41.2-9001
 Title: Quantitative DNA Sequencing for Chromosomal Aberrations
 Depends: R (>= 3.1.0)
 Imports:

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,11 @@
+# Version (development version)
+
+## Miscellaneous
+
+ * `exportBins(..., format = "vcf")` did not add meta-data information
+   for field `END` to the VCF file header.
+
+
 # Version 1.41.2 [2024-07-23]
 
 ## Bug Fixes

diff --git a/R/exportBins.R b/R/exportBins.R
@@ -220,6 +220,7 @@ exportVCF <- function(obj, fnames) {
                          '##ALT=<ID=DUP,Description="Duplication">',
                          '##FILTER=<ID=LOWQ,Description="Filtered due to call in low quality region">',
                          '##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of variant: DEL,DUP,INS">',
+                         '##INFO=<ID=END,Number=1,Type=Integer,Description="End position of variant">',
                          '##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Length of variant">',
                          '##INFO=<ID=BINS,Number=1,Type=Integer,Description="Number of bins in call">',
                          '##INFO=<ID=SCORE,Number=1,Type=Integer,Description="Score of calling algorithm">',