Formatting and bump version

caltechlibrary · Feb 17, 2022 · fdd6ff3 · fdd6ff3
1 parent 45fc261
commit fdd6ff3
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Showing 3 changed files with 39 additions and 36 deletions.
diff --git a/codemeta-cleaned-example.json b/codemeta-cleaned-example.json
@@ -1,31 +1,34 @@
 {
-  "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
-  "@type": "SoftwareSourceCode",
-  "codeRepository": "https://github.com/rlwillia/Integrase-differentiation",
-  "name": "Integrase-differentiation",
-  "issueTracker": "https://github.com/rlwillia/Integrase-differentiation/issues",
-  "license": "?",
-  "version": "?",
-  "author": [
-    {
-      "nameType": "Personal",
-      "name": "Williams, Rory",
-      "givenName": "Rory",
-      "familyName": "Williams",
-      "nameIdentifiers": [
+    "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
+    "@type": "SoftwareSourceCode",
+    "codeRepository": "https://github.com/rlwillia/Integrase-differentiation",
+    "name": "Integrase-differentiation",
+    "issueTracker": "https://github.com/rlwillia/Integrase-differentiation/issues",
+    "license": "?",
+    "version": "?",
+    "author": [
         {
-          "nameIdentifier": "https://orcid.org/0000-0003-2605-5790",
-          "schemeUri": "https://orcid.org",
-          "nameIdentifierScheme": "ORCID"
+            "nameType": "Personal",
+            "name": "Williams, Rory",
+            "givenName": "Rory",
+            "familyName": "Williams",
+            "nameIdentifiers": [
+                {
+                    "nameIdentifier": "https://orcid.org/0000-0003-2605-5790",
+                    "schemeUri": "https://orcid.org",
+                    "nameIdentifierScheme": "ORCID",
+                }
+            ],
+            "affiliation": "Caltech",
         }
-      ],
-      "affiliation": "Caltech"
-    }
-  ],
-  "description": "This repository contains descriptions of systems of ODEs used to model circuits using integrase-mediated differentiation for improving function of burdensome synthetic circuits, Jupyter notebooks for modeling these architectures with comparison to naive inducible production, and analysis of experimental results. Modeling and data are describe in the biorxiv submission 'Tunable integrase mediated differentiation facilitates improved output of burdensome functions' : https://www.biorxiv.org/content/10.1101/614529v1. Flow cytometry data used in the analysis and generation of figures can be found in CaltechDATA: https://doi.org/10.22002/D1.1228.",
-  "keywords": [
-    "synthetic biology", "integrase-mediated differentiation", "evolutionary stability", "flow cytometry"
-  ],
-  "developmentStatus": "active",
-  "downloadUrl": "https://github.com/rlwillia/Integrase-differentiation/archive/"
+    ],
+    "description": "This repository contains descriptions of systems of ODEs used to model circuits using integrase-mediated differentiation for improving function of burdensome synthetic circuits, Jupyter notebooks for modeling these architectures with comparison to naive inducible production, and analysis of experimental results. Modeling and data are describe in the biorxiv submission 'Tunable integrase mediated differentiation facilitates improved output of burdensome functions' : https://www.biorxiv.org/content/10.1101/614529v1. Flow cytometry data used in the analysis and generation of figures can be found in CaltechDATA: https://doi.org/10.22002/D1.1228.",
+    "keywords": [
+        "synthetic biology",
+        "integrase-mediated differentiation",
+        "evolutionary stability",
+        "flow cytometry",
+    ],
+    "developmentStatus": "active",
+    "downloadUrl": "https://github.com/rlwillia/Integrase-differentiation/archive/",
 }
diff --git a/codemeta.json b/codemeta.json
@@ -6,7 +6,7 @@
   "codeRepository": "https://github.com/caltechlibrary/ames",
   "issueTracker": "https://github.com/caltechlibrary/ames/issues",
   "license": "https://data.caltech.edu/license",
-  "version": "0.8.1",
+  "version": "0.9.0",
   "author": [
     {
       "@type": "Person",

diff --git a/tests/test_codemeta.py b/tests/test_codemeta.py
@@ -2,16 +2,16 @@
 from datacite import schema40
 from ames import codemeta_to_datacite
 
-infile = open('codemeta.json','r')
+infile = open("codemeta.json", "r")
 meta = json.load(infile)
 standardized = codemeta_to_datacite(meta)
-standardized['identifier'] = {'identifier':'10.1/1','identifierType':'DOI'}
-standardized['titles']= [{'title': "Title"}]
-standardized['publisher'] = 'publisher'
-standardized['publicationYear'] = '2018'
-standardized['resourceType'] = {'resourceTypeGeneral':"Software"}
-result =  schema40.validate(standardized)
-#Debugging if this fails
+standardized["identifier"] = {"identifier": "10.1/1", "identifierType": "DOI"}
+standardized["titles"] = [{"title": "Title"}]
+standardized["publisher"] = "publisher"
+standardized["publicationYear"] = "2018"
+standardized["resourceType"] = {"resourceTypeGeneral": "Software"}
+result = schema40.validate(standardized)
+# Debugging if this fails
 if result == False:
     v = schema40.validator.validate(standardized)
     errors = sorted(v.iter_errors(instance), key=lambda e: e.path)