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Achievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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btmartin721/README.md

Hi there!
I'm Bradley T. Martin, PhD
Bioinformatician, Data Scientist,
Evolutionary Biologist, and Population Geneticist

Twitter URL Follow me on Twitter!

✉️ [email protected]

I earned my Ph.D. in Biological Sciences, focusing on evolutionary biology and population genomics. While pursuing my doctorate, I developed a love for programming. Currently, I work as a bioinformatician and data scientist, specializing in developing machine learning software to process and analyze short-read and long-read genomic data.

I enjoy learning and new challenges and greatly enjoy my work. For personal projects, I am currently developing several new software to implement machine learning into population genomic analyses, which shows promise for resolving long-standing issues involving introgression, species delimitation, and phylogenomics.

🧰 Toolbox

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  1. ClineHelpR ClineHelpR Public

    Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

    R 15 2

  2. mecr_boxturtle mecr_boxturtle Public

    Collection of scripts for doing and plotting machine learning species delimitation results

    R 1

  3. makePopMap makePopMap Public

    Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files

    Python 1

  4. file_converters file_converters Public

    File conversion scripts for DNA sequence data

    Python 3 2

  5. R_scripts R_scripts Public

    Scripts written in R

    R 1 1

  6. raxml_ascbias raxml_ascbias Public

    Script for removing or counting invariant sites for the RAxML ascertainment bias corrections

    Python 14 3