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Differential expression across different timepoints and fates forward in time #101

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  • Run diff exp across different timepoints, for the same group of cells. Add a parameter to compare all combinations of timepoints.
    Example:
generate_comparisons(["A","B"], "all_times", [1,2,3,4]):
[(('A','A',),(1,2)),
(('A','A',),(1,3)),
(('A','A',),(1,4)),
(('A','A',),(2,3)),
(('A','A',),(2,4)),
(('A','A',),(3,4)),
(('B','B',),(1,2)),
(('B','B',),(1,3)),
(('B','B',),(1,4)),
(('B','B',),(2,3)),
(('B','B',),(2,4)),
(('B','B',),(3,4))]
  • Compute fates forward in time: Add flag to also compute fates forward in time.

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