Skip to content

Actions: broadinstitute/gatk

Actions

Build and Test GATK 4

Actions

Loading...
Loading

Show workflow options

Create status badge

Loading
gatk-tests.yml
1,603 workflow runs
1,603 workflow runs

Filter by Event

Filter by Status

Filter by Branch

Filter by Actor

Fixing what looks like a a bug in MendelianViolationEvaluator Build and Test GATK 4 #4986: Pull request #9080 opened by lbergelson
January 15, 2025 22:56 43m 26s lb_mendialian_violation_bug
lb_mendialian_violation_bug
January 15, 2025 22:56 43m 26s
Bump ch.qos.logback:logback-core from 1.4.14 to 1.5.13 Build and Test GATK 4 #4985: Pull request #9079 opened by dependabot bot
January 15, 2025 22:25 43m 19s dependabot/gradle/ch.qos.logback-logback-core-1.5.13
dependabot/gradle/ch.qos.logback-logback-core-1.5.13
January 15, 2025 22:25 43m 19s
Close a FeatureReader after use in HaplotypeCallerEngine (#9078) Build and Test GATK 4 #4984: Commit 373df45 pushed by lbergelson
January 15, 2025 22:23 43m 59s master
master
January 15, 2025 22:23 43m 59s
Close a FeatureReader after use Build and Test GATK 4 #4983: Pull request #9078 opened by lbergelson
January 15, 2025 20:37 46m 8s lb_miss_try_with_resources
lb_miss_try_with_resources
January 15, 2025 20:37 46m 8s
Remove unnecessary calculation Build and Test GATK 4 #4982: Pull request #9077 opened by lbergelson
January 15, 2025 20:20 14m 23s lb_remove_unecessary_calculation
lb_remove_unecessary_calculation
January 15, 2025 20:20 14m 23s
[DO NOT MERGE] Build and Test GATK 4 #4981: Pull request #9045 synchronize by jamesemery
January 15, 2025 19:43 53m 56s je_updateCondaEnvironment
je_updateCondaEnvironment
January 15, 2025 19:43 53m 56s
VS-1170 documentation updates Build and Test GATK 4 #4980: Pull request #9076 opened by gbggrant
January 14, 2025 19:39 3h 45m 21s gg_VS-1170_DocumentationUpdates
gg_VS-1170_DocumentationUpdates
January 14, 2025 19:39 3h 45m 21s
BQSR: avoid throwing an error when read group is missing in the recal table, and some refactoring. Build and Test GATK 4 #4979: Pull request #9020 synchronize by takutosato
January 14, 2025 12:17 47m 12s ts_bqsr_read_group
ts_bqsr_read_group
January 14, 2025 12:17 47m 12s
[DO NOT MERGE] Build and Test GATK 4 #4978: Pull request #9045 synchronize by jamesemery
January 13, 2025 19:09 53m 19s je_updateCondaEnvironment
je_updateCondaEnvironment
January 13, 2025 19:09 53m 19s
Create tools for SV VCF cleaning Build and Test GATK 4 #4977: Pull request #8996 synchronize by kjaisingh
January 13, 2025 15:55 48m 27s kj_sv_cleanvcf
kj_sv_cleanvcf
January 13, 2025 15:55 48m 27s
[DO NOT MERGE] Build and Test GATK 4 #4976: Pull request #9045 synchronize by jamesemery
January 13, 2025 15:41 57m 39s je_updateCondaEnvironment
je_updateCondaEnvironment
January 13, 2025 15:41 57m 39s
[DO NOT MERGE] Build and Test GATK 4 #4975: Pull request #9045 synchronize by jamesemery
January 10, 2025 18:48 30m 58s je_updateCondaEnvironment
je_updateCondaEnvironment
January 10, 2025 18:48 30m 58s
[DO NOT MERGE] Build and Test GATK 4 #4974: Pull request #9045 synchronize by jamesemery
January 10, 2025 18:13 1h 9m 54s je_updateCondaEnvironment
je_updateCondaEnvironment
January 10, 2025 18:13 1h 9m 54s
[DO NOT MERGE] Build and Test GATK 4 #4973: Pull request #9045 synchronize by jamesemery
January 10, 2025 17:55 31m 23s je_updateCondaEnvironment
je_updateCondaEnvironment
January 10, 2025 17:55 31m 23s
Monitoring script changes for GCP Batch [VS-1550] Build and Test GATK 4 #4972: Pull request #9071 synchronize by mcovarr
January 10, 2025 17:37 3h 42m 56s vs_1550_monitoring_script
vs_1550_monitoring_script
January 10, 2025 17:37 3h 42m 56s
Monitoring script changes for GCP Batch [VS-1550] Build and Test GATK 4 #4971: Pull request #9071 synchronize by mcovarr
January 10, 2025 17:32 4h 5m 22s vs_1550_monitoring_script
vs_1550_monitoring_script
January 10, 2025 17:32 4h 5m 22s
[DO NOT MERGE] Build and Test GATK 4 #4970: Pull request #9045 synchronize by jamesemery
January 10, 2025 16:35 31m 25s je_updateCondaEnvironment
je_updateCondaEnvironment
January 10, 2025 16:35 31m 25s
BQSR: avoid throwing an error when read group is missing in the recal table, and some refactoring. Build and Test GATK 4 #4969: Pull request #9020 synchronize by takutosato
January 10, 2025 04:39 47m 0s ts_bqsr_read_group
ts_bqsr_read_group
January 10, 2025 04:39 47m 0s
BQSR: avoid throwing an error when read group is missing in the recal table, and some refactoring. Build and Test GATK 4 #4968: Pull request #9020 synchronize by takutosato
January 10, 2025 03:52 47m 36s ts_bqsr_read_group
ts_bqsr_read_group
January 10, 2025 03:52 47m 36s
Monitoring script changes for GCP Batch [VS-1550] Build and Test GATK 4 #4967: Pull request #9071 synchronize by mcovarr
January 8, 2025 07:51 2h 12m 33s vs_1550_monitoring_script
vs_1550_monitoring_script
January 8, 2025 07:51 2h 12m 33s
Monitoring script changes for GCP Batch [VS-1550] Build and Test GATK 4 #4966: Pull request #9071 synchronize by mcovarr
January 7, 2025 22:38 2h 10m 40s vs_1550_monitoring_script
vs_1550_monitoring_script
January 7, 2025 22:38 2h 10m 40s
Monitoring script changes for GCP Batch [VS-1550] Build and Test GATK 4 #4965: Pull request #9071 opened by mcovarr
January 7, 2025 22:35 2h 13m 45s vs_1550_monitoring_script
vs_1550_monitoring_script
January 7, 2025 22:35 2h 13m 45s
Add VAT clinvar reverse complement Build and Test GATK 4 #4964: Pull request #9070 opened by RoriCremer
January 7, 2025 04:23 2h 26m 18s rc-vs-1457-vat-clinvar
rc-vs-1457-vat-clinvar
January 7, 2025 04:23 2h 26m 18s
GCP Batch-friendly Cromwell root detection [VS-1532] Build and Test GATK 4 #4963: Pull request #9069 synchronize by mcovarr
January 6, 2025 22:00 2h 40m 46s vs_1532_improved_containment_breakage
vs_1532_improved_containment_breakage
January 6, 2025 22:00 2h 40m 46s
GCP Batch-friendly Cromwell root detection [VS-1532] Build and Test GATK 4 #4962: Pull request #9069 synchronize by mcovarr
January 6, 2025 18:40 2h 6m 57s vs_1532_improved_containment_breakage
vs_1532_improved_containment_breakage
January 6, 2025 18:40 2h 6m 57s