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Build and Test GATK 4

[DO NOT MERGE] #4973

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[DO NOT MERGE]

[DO NOT MERGE] #4973

Run time

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Job Run time
check if the environment has privileges
1s
Validate generated WDLs using womtools
13m 51s
build and push gatk docker to artifacts
9m 13s
Validate script WDLs using womtools
46s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
10m 34s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
10m 55s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
10m 54s
WDL test RUN_M2_WDL on cromwell
10m 50s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
11m 22s
Java 17.0.6+10 build and test cloud
18m 9s
Java 17.0.6+10 build and test integration
30m 59s
Java 17.0.6+10 build and test unit
17m 10s
Java ${{ matrix.Java }} test on docker ${{ matrix.testType }}
0s
2h 24m 44s