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Build and Test GATK 4

VS 1528 Update the sharding of the samples in the VAT creation to be dependent on the number of samples #4914

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VS 1528 Update the sharding of the samples in the VAT creation to be dependent on the number of samples

VS 1528 Update the sharding of the samples in the VAT creation to be dependent on the number of samples #4914

Run time

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Job Run time
Validate script WDLs using womtools
49s
Validate script WDLs using womtools
49s
check if the environment has privileges
1s
check if the environment has privileges
1s
Validate generated WDLs using womtools
13m 25s
Validate generated WDLs using womtools
13m 25s
build and push gatk docker to artifacts
2h 6m 46s
build and push gatk docker to artifacts
2h 6m 46s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
2h 26m 7s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
2h 26m 7s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
1h 54m 55s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
1h 54m 55s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
1h 44m 14s
WDL test RUN_CNV_SOMATIC_WDL on cromwell
1h 44m 14s
WDL test RUN_M2_WDL on cromwell
1h 41m 30s
WDL test RUN_M2_WDL on cromwell
1h 41m 30s
WDL test RUN_CNN_WDL on cromwell
1h 34m 56s
WDL test RUN_CNN_WDL on cromwell
2h 21m 13s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
1h 41m 34s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
1h 41m 34s
Java 17.0.6+10 build and test cloud
16m 44s
Java 17.0.6+10 build and test cloud
16m 44s
Java 17.0.6+10 build and test integration
35m 20s
Java 17.0.6+10 build and test integration
35m 20s
Java 17.0.6+10 build and test unit
20m 27s
Java 17.0.6+10 build and test unit
20m 27s
Java 17.0.6+10 test on docker integration
38m 19s
Java 17.0.6+10 test on docker integration
38m 19s
Java 17.0.6+10 test on docker unit
22m 39s
Java 17.0.6+10 test on docker unit
22m 39s
Java 17.0.6+10 test on docker variantcalling
33m 23s
Java 17.0.6+10 test on docker variantcalling
33m 23s
Java 17.0.6+10 test on docker conda
30m 18s
Java 17.0.6+10 test on docker conda
30m 18s
1d 10h 9m 11s