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StrainGE 1.3
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@lrvdijk lrvdijk released this 15 Apr 13:46
· 33 commits to master since this release
v1.3
d9c77b0

Changelog:

  • [FEAT] Add a new StrainGST output mode (enabled with --separate-outputs), which splits the sample statistics and reported strains in separate TSVs. These TSVs are more easily read and combined in Pandas or R (#7).
  • [FIX] Removed straingr view VCF verbose level 2, as pysam does not allow us to write VCF entries with a single allele (#10).
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