Renormalize when using gcov fallback

broadinstitute · Apr 9, 2021 · 7a31a84 · 7a31a84
1 parent 99a2644
commit 7a31a84
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/src/strainge/search_tool.py b/src/strainge/search_tool.py
@@ -342,6 +342,7 @@ def calc_relative_abundance(self, sample, result):
             if np.count_nonzero(zero_ix) > 0:
                 gcov_abun = gcovs / gcovs.sum()
                 abundances[zero_ix] = gcov_abun[ix]
+                abundances /= abundances.sum()
 
         abundances *= result.pan_pct