Give warning if computing filter thresholds failed

broadinstitute · Jun 3, 2022 · 17cea59 · 17cea59
1 parent 35091b8
commit 17cea59
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/src/strainge/cli/kmersets.py b/src/strainge/cli/kmersets.py
@@ -197,6 +197,8 @@ def __call__(self, k, sequences, output, limit=None, prune=None,
             if thresholds:
                 logger.info("Filtered kmerset. Only k-mers within frequency "
                             "range [%d, %d] are kept (mode %d).", *(thresholds[0], thresholds[2], thresholds[1]))
+            else:
+                logger.warning("Unable to compute filter thresholds! Continuing without filtering...")
 
         if fingerprint_fraction:
             kmerset.min_hash(fingerprint_fraction)