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Add prefix: deims #1382

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merged 7 commits into from
Jan 29, 2025
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Add prefix: deims #1382

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7e03649
[create-pull-request] automated change
cmungall Jan 28, 2025
b12b606
Update bioregistry.json
cthoyt Jan 28, 2025
8ceb00c
Add API endpoints
cthoyt Jan 28, 2025
ea4e791
Add three additional prefixes for DEIMS
cthoyt Jan 28, 2025
7874839
Update bioregistry.json
cthoyt Jan 29, 2025
5ad6a4c
Update bioregistry.json
cthoyt Jan 29, 2025
bc37b40
Update bioregistry.json
cthoyt Jan 29, 2025
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349 changes: 349 additions & 0 deletions src/bioregistry/data/bioregistry.json
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Expand Up @@ -26108,6 +26108,355 @@
"uri_format": "http://degradome.uniovi.es/cgi-bin/protease/$1"
}
},
"deims.activity": {
"contact": {
"email": "[email protected]",
"github": "stopopol",
"name": "Christoph Wohner",
"orcid": "0000-0002-0655-3699"
},
"contributor": {
"email": "[email protected]",
"github": "cthoyt",
"name": "Charles Tapley Hoyt",
"orcid": "0000-0003-4423-4370"
},
"description": "Activities in DEIMS SDR",
"example": "7dfd3f10-d410-45a4-983d-8fbd6dfbc374",
"github_request_issue": 1381,
"homepage": "https://deims.org",
"license": "CC-BY-NC-4.0",
"name": "Dynamic Ecological Information Management System - Site and Dataset Registry - Activity",
"part_of": "deims",
"pattern": "^[0-9a-f\\-]+$",
"providers": [
{
"code": "api",
"description": "A first-party API endpoint for an activity in DEIMS-SDR",
"homepage": "https://deims.org/api",
"name": "DEIMS-SDR API",
"uri_format": "https://deims.org/api/activities/$1"
}
],
"publications": [
{
"doi": "10.1016/j.ecoinf.2022.101708",
"pmc": "PMC9461184",
"pubmed": "36105745",
"title": "Designing and implementing a data model for describing environmental monitoring and research sites",
"year": 2022
},
{
"doi": "10.1016/j.ecoinf.2020.101158",
"title": "Towards interoperable research site documentation – Recommendations for information models and data provision",
"year": 2020
},
{
"doi": "10.1016/j.ecoinf.2019.01.005",
"title": "DEIMS-SDR – A web portal to document research sites and their associated data",
"year": 2019
}
],
"uri_format": "https://deims.org/activity/$1"
},
"deims.dataset": {
"contact": {
"email": "[email protected]",
"github": "stopopol",
"name": "Christoph Wohner",
"orcid": "0000-0002-0655-3699"
},
"contributor": {
"email": "[email protected]",
"github": "cthoyt",
"name": "Charles Tapley Hoyt",
"orcid": "0000-0003-4423-4370"
},
"description": "Datasets in DEIMS SDR",
"example": "bb0754dd-7e69-4b29-b348-3f8017f73d6b",
"github_request_issue": 1381,
"homepage": "https://deims.org",
"license": "CC-BY-NC-4.0",
"name": "Dynamic Ecological Information Management System - Site and Dataset Registry - Dataset",
"part_of": "deims",
"pattern": "^[0-9a-f\\-]+$",
"providers": [
{
"code": "api",
"description": "A first-party API endpoint for a dataset in DEIMS-SDR",
"homepage": "https://deims.org/api",
"name": "DEIMS-SDR API",
"uri_format": "https://deims.org/api/datasets/$1"
}
],
"publications": [
{
"doi": "10.1016/j.ecoinf.2022.101708",
"pmc": "PMC9461184",
"pubmed": "36105745",
"title": "Designing and implementing a data model for describing environmental monitoring and research sites",
"year": 2022
},
{
"doi": "10.1016/j.ecoinf.2020.101158",
"title": "Towards interoperable research site documentation – Recommendations for information models and data provision",
"year": 2020
},
{
"doi": "10.1016/j.ecoinf.2019.01.005",
"title": "DEIMS-SDR – A web portal to document research sites and their associated data",
"year": 2019
}
],
"uri_format": "https://deims.org/dataset/$1"
},
"deims.location": {
"contact": {
"email": "[email protected]",
"github": "stopopol",
"name": "Christoph Wohner",
"orcid": "0000-0002-0655-3699"
},
"contributor": {
"email": "[email protected]",
"github": "cthoyt",
"name": "Charles Tapley Hoyt",
"orcid": "0000-0003-4423-4370"
},
"description": "Locations in DEIMS SDR",
"example": "85dc6019-9654-4ba0-8338-08c4ffe8fe47",
"github_request_issue": 1381,
"homepage": "https://deims.org",
"license": "CC-BY-NC-4.0",
"name": "Dynamic Ecological Information Management System - Site and Dataset Registry - Locations",
"part_of": "deims",
"pattern": "^[0-9a-f\\-]+$",
"providers": [
{
"code": "api",
"description": "A first-party API endpoint for a location in DEIMS-SDR",
"homepage": "https://deims.org/api",
"name": "DEIMS-SDR API",
"uri_format": "https://deims.org/api/locations/$1"
}
],
"publications": [
{
"doi": "10.1016/j.ecoinf.2022.101708",
"pmc": "PMC9461184",
"pubmed": "36105745",
"title": "Designing and implementing a data model for describing environmental monitoring and research sites",
"year": 2022
},
{
"doi": "10.1016/j.ecoinf.2020.101158",
"title": "Towards interoperable research site documentation – Recommendations for information models and data provision",
"year": 2020
},
{
"doi": "10.1016/j.ecoinf.2019.01.005",
"title": "DEIMS-SDR – A web portal to document research sites and their associated data",
"year": 2019
}
],
"uri_format": "https://deims.org/locations/$1"
},
"deims.network": {
"contact": {
"email": "[email protected]",
"github": "stopopol",
"name": "Christoph Wohner",
"orcid": "0000-0002-0655-3699"
},
"contributor": {
"email": "[email protected]",
"github": "cthoyt",
"name": "Charles Tapley Hoyt",
"orcid": "0000-0003-4423-4370"
},
"description": "Networks in DEIMS SDR",
"example": "c3abdc60-49f1-49db-81fe-863b7dbb21d3",
"github_request_issue": 1381,
"homepage": "https://deims.org",
"license": "CC-BY-NC-4.0",
"name": "Dynamic Ecological Information Management System - Site and Dataset Registry - Network",
"part_of": "deims",
"pattern": "^[0-9a-f\\-]+$",
"publications": [
{
"doi": "10.1016/j.ecoinf.2022.101708",
"pmc": "PMC9461184",
"pubmed": "36105745",
"title": "Designing and implementing a data model for describing environmental monitoring and research sites",
"year": 2022
},
{
"doi": "10.1016/j.ecoinf.2020.101158",
"title": "Towards interoperable research site documentation – Recommendations for information models and data provision",
"year": 2020
},
{
"doi": "10.1016/j.ecoinf.2019.01.005",
"title": "DEIMS-SDR – A web portal to document research sites and their associated data",
"year": 2019
}
],
"uri_format": "https://deims.org/networks/$1"
},
"deims.sensor": {
"contact": {
"email": "[email protected]",
"github": "stopopol",
"name": "Christoph Wohner",
"orcid": "0000-0002-0655-3699"
},
"contributor": {
"email": "[email protected]",
"github": "cthoyt",
"name": "Charles Tapley Hoyt",
"orcid": "0000-0003-4423-4370"
},
"description": "Sensors in DEIMS SDR",
"example": "2af339dd-a956-471f-9406-b0f74bacd579",
"github_request_issue": 1381,
"homepage": "https://deims.org",
"license": "CC-BY-NC-4.0",
"name": "Dynamic Ecological Information Management System - Site and Dataset Registry - Sensor",
"part_of": "deims",
"pattern": "^[0-9a-f\\-]+$",
"providers": [
{
"code": "api",
"description": "A first-party API endpoint for a sensor in DEIMS-SDR",
"homepage": "https://deims.org/api",
"name": "DEIMS-SDR API",
"uri_format": "https://deims.org/api/sensors/$1"
}
],
"publications": [
{
"doi": "10.1016/j.ecoinf.2022.101708",
"pmc": "PMC9461184",
"pubmed": "36105745",
"title": "Designing and implementing a data model for describing environmental monitoring and research sites",
"year": 2022
},
{
"doi": "10.1016/j.ecoinf.2020.101158",
"title": "Towards interoperable research site documentation – Recommendations for information models and data provision",
"year": 2020
},
{
"doi": "10.1016/j.ecoinf.2019.01.005",
"title": "DEIMS-SDR – A web portal to document research sites and their associated data",
"year": 2019
}
],
"uri_format": "https://deims.org/sensors/$1"
},
"deims.site": {
"comment": "This is an important resource for us in fields like environmental genomics. We frequently want to link metagenome samples to sites to make it easier to pull in environmental data to explore connections between environments, gene functions, community structure, etc. I will try and reach out to establish contacts with them",
"contact": {
"email": "[email protected]",
"github": "stopopol",
"name": "Christoph Wohner",
"orcid": "0000-0002-0655-3699"
},
"contributor": {
"email": "[email protected]",
"github": "cmungall",
"name": "Chris Mungall",
"orcid": "0000-0002-6601-2165"
},
"description": "DEIMS-SDR (Dynamic Ecological Information Management System - Site and dataset registry) is an information management system powered by eLTER. It allows you to discover long-term ecosystem research sites around the globe, along with the data gathered at those sites and the people and networks associated with them. DEIMS-SDR describes a wide range of sites, providing a wealth of information, including each site’s location, ecosystems, facilities, parameters measured and research themes. It is also possible to access a growing number of datasets and data products associated with the sites.",
"example": "0e39569d-ff81-4b78-9c34-b07309504d80",
"github_request_issue": 1381,
"homepage": "https://deims.org/",
"license": "CC-BY-NC-4.0",
"name": "Dynamic Ecological Information Management System - Site and dataset registry",
"part_of": "deims",
"pattern": "^[0-9a-f\\-]+$",
"providers": [
{
"code": "api",
"description": "A first-party API endpoint for a site in DEIMS-SDR",
"homepage": "https://deims.org/api",
"name": "DEIMS-SDR API",
"uri_format": "https://deims.org/api/sites/$1"
}
],
"publications": [
{
"doi": "10.1016/j.ecoinf.2022.101708",
"pmc": "PMC9461184",
"pubmed": "36105745",
"title": "Designing and implementing a data model for describing environmental monitoring and research sites",
"year": 2022
},
{
"doi": "10.1016/j.ecoinf.2020.101158",
"title": "Towards interoperable research site documentation – Recommendations for information models and data provision",
"year": 2020
},
{
"doi": "10.1016/j.ecoinf.2019.01.005",
"title": "DEIMS-SDR – A web portal to document research sites and their associated data",
"year": 2019
}
],
"reviewer": {
"email": "[email protected]",
"github": "cthoyt",
"name": "Charles Tapley Hoyt",
"orcid": "0000-0003-4423-4370"
},
"synonyms": [
"deims.id"
],
"uri_format": "https://deims.org/$1"
},
"deims.taxonomy": {
"contact": {
"email": "[email protected]",
"github": "stopopol",
"name": "Christoph Wohner",
"orcid": "0000-0002-0655-3699"
},
"contributor": {
"email": "[email protected]",
"github": "cthoyt",
"name": "Charles Tapley Hoyt",
"orcid": "0000-0003-4423-4370"
},
"description": "Taxonomy in DEIMS SDR",
"example": "21157",
"github_request_issue": 1381,
"homepage": "https://deims.org",
"license": "CC-BY-NC-4.0",
"name": "Dynamic Ecological Information Management System - Site and Dataset Registry - Taxonomy",
"part_of": "deims",
"pattern": "^\\d+$",
"publications": [
{
"doi": "10.1016/j.ecoinf.2022.101708",
"pmc": "PMC9461184",
"pubmed": "36105745",
"title": "Designing and implementing a data model for describing environmental monitoring and research sites",
"year": 2022
},
{
"doi": "10.1016/j.ecoinf.2020.101158",
"title": "Towards interoperable research site documentation – Recommendations for information models and data provision",
"year": 2020
},
{
"doi": "10.1016/j.ecoinf.2019.01.005",
"title": "DEIMS-SDR – A web portal to document research sites and their associated data",
"year": 2019
}
],
"uri_format": "https://deims.org/taxonomy/term/$1"
},
"deo": {
"contributor": {
"email": "[email protected]",
Expand Down