Apply black 2025 formatting (#1390)

src/bioregistry/gh/github_client.py

@@ -294,4 +294,4 @@ def _git(*args: str) -> Optional[str]:
             logger.warning(f"error in _git:\n{e}")
             return None
         else:
-            return ret.strip().decode("utf-8")
+            return ret.strip().decode("utf-8")

src/bioregistry/gh/new_prefix.py

@@ -169,6 +169,7 @@ def get_new_prefix_issues(token: Optional[str] = None) -> Dict[int, Resource]:
             rv[issue_id] = resource
     return rv
 
+
 def process_specific_issue(issue: int) -> Dict[int, Resource]:
     """Process a specific issue and return a dictionary mapping the issue number to the resource."""
     click.echo(f"Processing specific issue {issue}")
@@ -181,6 +182,7 @@ def process_specific_issue(issue: int) -> Dict[int, Resource]:
         sys.exit(1)
     return {issue: resource}
 
+
 def process_all_relevant_issues() -> Dict[int, Resource]:
     """Process all relevant issues and return a dictionary mapping issue numbers to resources."""
     click.echo("No specific issue provided. Searching for all relevant issues")
@@ -221,6 +223,7 @@ def process_all_relevant_issues() -> Dict[int, Resource]:
 
     return issue_to_resource
 
+
 def _yield_publications(data) -> Iterable[Publication]:
     for curie in data.pop("publications", "").split("|"):
         curie = curie.strip().lower()
@@ -266,12 +269,18 @@ def make_title(prefixes: Sequence[str]) -> str:
 @click.command()
 @click.option("--dry", is_flag=True, help="Dry run - do not create any PRs")
 @click.option("--github", is_flag=True, help="Use this flag in a GHA setting to set run variables")
-@click.option("--issue", type=int, help="Specific issue to process rather than finding all relevant ones")
+@click.option(
+    "--issue", type=int, help="Specific issue to process rather than finding all relevant ones"
+)
 @force_option
 @verbose_option
 def main(dry: bool, github: bool, force: bool, issue: Optional[int] = None):
     """Run the automatic curator."""
-    click.echo(f"Running workflow with issue: {issue}" if issue else "Running workflow for all relevant issues")
+    click.echo(
+        f"Running workflow with issue: {issue}"
+        if issue
+        else "Running workflow for all relevant issues"
+    )
 
     status_porcelain_result = github_client.status_porcelain()
     if status_porcelain_result and not force and not dry:

tests/test_new_prefix.py

@@ -3,8 +3,8 @@
 import copy
 import json
 import unittest
-from unittest.mock import patch
 from pathlib import Path
+from unittest.mock import patch
 
 from click.testing import CliRunner
 
@@ -158,7 +158,7 @@ def test_all_relevant_issues(self, mock_add_resource, mock_github_client):
         """Test the workflow in a dry run for a all relevant issues."""
         mock_github_client.get_bioregistry_form_data.return_value = {
             1181: copy.deepcopy(NCBIORTHOLOG_TEST),
-            1278: copy.deepcopy(VIBSO_TEST)
+            1278: copy.deepcopy(VIBSO_TEST),
         }
 
         runner = CliRunner()
@@ -167,7 +167,9 @@ def test_all_relevant_issues(self, mock_add_resource, mock_github_client):
         self.assertEqual(result.exit_code, 0)
         self.assertIn("Running workflow for all relevant issues", result.output)
 
-        self.assertIn("No specific issue provided. Searching for all relevant issues", result.output)
+        self.assertIn(
+            "No specific issue provided. Searching for all relevant issues", result.output
+        )
         self.assertIn("Adding 2 issues after filter", result.output)
 
         self.assertIn("🚀 Adding resource ncbiortholog.test (#1181)", result.output)