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Update StarDist-Drosophila-Melanogaster #697

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merged 3 commits into from
Feb 21, 2024

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bioimageiobot
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This is an automatic PR created by the @bioimageiobot regarding changes to the resource item 10.5281/zenodo.10406343.
The following version(s) will be added:

Please review the changes and make sure the new item or version(s) pass the following check list:

  • Passed the bioimage.io CI tests: static (and dynamic) validations
  • The meta information for the RDF item is complete
    • The tags are complete and describe the model
    • Naming is intuitive and descriptive, example: Multi-Organ Nucleus Segmentation (StarDist 2D)
    • Authors are provided
    • Documentation is complete
      • For models, include an overview, describe how the model is trained, what is the training data, how to use the model, how to validate the results and list the references. TODO: Model documentation template.
  • Approved by at least one of the bioimage.io admin team member.

Maintainers: @cfusterbarcelo

Note: If you updated or re-uploaded another version for the current item on Zenodo, this PR won't be changed automatically. To proceed, you can do the following:

  1. Block this version, but keep looking for future versions: Edit the current resource.yaml and keep the top-level status field as accepted, but change the status under the current version to blocked.
  2. Accept this version and keep looking for future versions: Merge this PR for now.
  3. Keep proposed version(s) (and this resource in general if it is new) as pending: Close this PR without merging.

Then wait for the CI on the main branch to complete. It should detect the new version(s) and create another PR for the new version(s).

Previous PRs of this resource: none

@FynnBe
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FynnBe commented Dec 23, 2023

This current version has an invalid conda environment file:
The ; extra == "bioimageio" doesn't make sense.

@FynnBe FynnBe mentioned this pull request Jan 10, 2024
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@esgomezm
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@cfusterbarcelo can you please correct this one and update both models? (stardist_topix2pix as well) It's the environment file referred in the yaml, in the weights field. Also, see if you can update the name of the model stardist_topix2pix following the naming convection of being human readable and tailored for non-expert users (check the description).

@bioimageiobot
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preview-collection-json

@FynnBe FynnBe merged commit af904df into main Feb 21, 2024
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@FynnBe FynnBe deleted the auto-update-10.5281/zenodo.10406343 branch February 21, 2024 09:39
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3 participants