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correct indent and print inp matrix
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carlosuc3m authored Dec 18, 2023
1 parent 2104926 commit 02502b2
Showing 1 changed file with 6 additions and 14 deletions.
20 changes: 6 additions & 14 deletions .github/workflows/bioimageio_ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -30,22 +30,14 @@ jobs:
repository: bioimage-io/collection-bioimage-io
ref: gh-pages
path: bioimageio-gh-pages
- name: Print pending_matrix
run: echo "Pending Matrix: ${{ github.event.inputs.pending_matrix }}"
- name: Setup Maven Action
uses: s4u/setup-maven-action@< version >
with:
java-version: 11
maven-version: 3.9.5
- name: Download JDLL
run: git clone
- name: ignore unrelated packages
run: sed -i '/multi-hypotheses-tracking-with-gurobi/d; /gurobi-symlink/d' env.yaml
- name: Setup ilastik env
uses: mamba-org/setup-micromamba@v1
with:
environment-file: env.yaml
cache-downloads: true
cache-environment: true
- name: test with ilastik ${{ matrix.v }}
java-version: 11
maven-version: 3.9.5
- name: test with JDLL
shell: bash -l {0}
run: python scripts/test_many_with_ilastik.py dist '${{ github.event.inputs.pending_matrix }}' --postfix ${{ matrix.v }}
- name: Upload test summaries
Expand All @@ -56,7 +48,7 @@ jobs:
retention-days: 1

deploy:
needs: [run, setup]
needs: [run]
if: needs.setup.outputs.pending_empty == 'no'
runs-on: ubuntu-latest
steps:
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