updated test files

bioforensics · Apr 12, 2024 · e4eae73 · e4eae73
1 parent 0fb9c8f
commit e4eae73
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Showing 10 changed files with 56,102 additions and 56,102 deletions.
diff --git a/lusSTR/tests/data/kinsnps/Kin_pos_1ng_snpsetscombined_evidence.tsv b/lusSTR/tests/data/kinsnps/Kin_pos_1ng_snpsetscombined_evidence.tsv
diff --git a/lusSTR/tests/data/kinsnps/evidence.csv b/lusSTR/tests/data/kinsnps/evidence.csv
diff --git a/lusSTR/tests/data/kinsnps/evidence.tsv b/lusSTR/tests/data/kinsnps/evidence.tsv
diff --git a/lusSTR/tests/data/kinsnps/multiplerefs.csv b/lusSTR/tests/data/kinsnps/multiplerefs.csv
diff --git a/lusSTR/tests/data/kinsnps/multiplerefs.tsv b/lusSTR/tests/data/kinsnps/multiplerefs.tsv
diff --git a/lusSTR/tests/data/kinsnps/reference.csv b/lusSTR/tests/data/kinsnps/reference.csv
diff --git a/lusSTR/tests/data/kinsnps/reference.tsv b/lusSTR/tests/data/kinsnps/reference.tsv
diff --git a/lusSTR/tests/data/kinsnps/uasversion_snp_evidence.csv b/lusSTR/tests/data/kinsnps/uasversion_snp_evidence.csv
diff --git a/lusSTR/tests/data/kinsnps/uasversion_snp_evidence.tsv b/lusSTR/tests/data/kinsnps/uasversion_snp_evidence.tsv
diff --git a/lusSTR/tests/test_snps.py b/lusSTR/tests/test_snps.py
@@ -169,10 +169,10 @@ def test_kintelligence(output, filtering, tmp_path):
 
 def test_kintelligence_all(tmp_path):
     inputdb = data_file("kinsnps/")
-    evid_exp_output = data_file("kinsnps/evidence.csv")
-    ref_exp_output = data_file("kinsnps/reference.csv")
-    evid_obs_output = f"{str(tmp_path)}/kin_snp_evidence.csv"
-    ref_obs_output = f"{str(tmp_path)}/kin_snp_reference.csv"
+    evid_exp_output = data_file("kinsnps/evidence.tsv")
+    ref_exp_output = data_file("kinsnps/reference.tsv")
+    evid_obs_output = f"{str(tmp_path)}/kin_snp_evidence.tsv"
+    ref_obs_output = f"{str(tmp_path)}/kin_snp_reference.tsv"
     arglist = [
         "config",
         "-w",
@@ -195,8 +195,8 @@ def test_kintelligence_all(tmp_path):
 
 def test_multiple_reference_profiles(tmp_path):
     inputdb = data_file("kinsnps/")
-    exp_out = data_file("kinsnps/multiplerefs.csv")
-    obs_out = str(tmp_path / "kin_snp_reference.csv")
+    exp_out = data_file("kinsnps/multiplerefs.tsv")
+    obs_out = str(tmp_path / "kin_snp_reference.tsv")
     arglist = [
         "config",
         "-w",
@@ -243,8 +243,8 @@ def test_snp_bins(tmp_path):
 
 def test_uas_version5(tmp_path):
     input_sample = data_file("NA24385 Sample Report 2023_09_07_15_11_11.xlsx")
-    exp_out = data_file("kinsnps/uasversion_snp_evidence.csv")
-    obs_out = str(tmp_path / "kin_v5_snp_evidence.csv")
+    exp_out = data_file("kinsnps/uasversion_snp_evidence.tsv")
+    obs_out = str(tmp_path / "kin_v5_snp_evidence.tsv")
     arglist = [
         "config",
         "-w",